Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_P07
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1796 - 39932487-39932633,39933150-39933201,39933370-399334... 45 4e-05
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 34 0.078
06_03_1360 + 29558789-29559020,29559203-29559378,29560285-295603... 32 0.31
12_01_0794 + 7285100-7285369,7285931-7286338 32 0.42
03_03_0253 + 15871870-15871949,15872101-15872170,15872666-158727... 32 0.42
11_03_0142 + 10675764-10675991,10676533-10676943 31 0.55
06_03_1362 + 29571324-29571564,29571746-29571921,29571972-295722... 31 0.96
01_05_0292 + 20518668-20519090,20519213-20519281,20520204-205204... 29 2.2
07_01_0789 - 6150257-6151046,6151167-6151390,6151816-6151991,615... 29 3.9
06_03_1359 + 29554078-29554375,29554470-29554655,29554768-295549... 29 3.9
05_01_0084 + 562119-562411,562854-562902,563151-563162,563194-56... 29 3.9
10_08_0959 - 21813756-21814097,21814462-21814570,21814688-218147... 28 6.8
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306... 27 8.9
>01_06_1796 -
39932487-39932633,39933150-39933201,39933370-39933495,
39933645-39933743,39934039-39934258,39934599-39934764,
39935108-39935161,39935527-39935657,39935747-39935818,
39936524-39936602,39936705-39936783,39936868-39936902,
39936986-39937111
Length = 461
Score = 45.2 bits (102), Expect = 4e-05
Identities = 17/27 (62%), Positives = 21/27 (77%)
Frame = -3
Query: 103 RVKDNDLDPMDPAXYSDVPRGNWTSGL 23
R +D++LDPMDP+ YSD PRG W GL
Sbjct: 374 RPEDDELDPMDPSSYSDAPRGGWVVGL 400
Score = 41.1 bits (92), Expect = 7e-04
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = -3
Query: 388 LPPGWEEVFDEGYGQHYFWNVHTNLVSWIPP 296
LP WEE D+ GQ Y++N +T W PP
Sbjct: 235 LPENWEEALDQSTGQKYYYNTNTQATQWEPP 265
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Frame = -3
Query: 388 LPPGWEEVFDEGYGQHYFWNVHTNLVSWIPPGHP------RAVPTESAAQLREERL 239
LPPGW E D G YF+N T W PG P +A P+ S + EE L
Sbjct: 188 LPPGWVEAKDPTSGASYFYNQSTGTTQWDRPGAPLNTMQHQAPPSSSLPENWEEAL 243
>01_03_0256 +
14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 34.3 bits (75), Expect = 0.078
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 388 LPPGWEEVFDEGYGQHYFWNVHTNLVSWIPP 296
LPPGWEE FD G+ ++ + +T +W P
Sbjct: 526 LPPGWEERFDSVTGKSFYIDHNTRTTTWEHP 556
>06_03_1360 +
29558789-29559020,29559203-29559378,29560285-29560346,
29560426-29561212,29561516-29562244
Length = 661
Score = 32.3 bits (70), Expect = 0.31
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 535 PVKGHRGCPNKSNIYHECXTFCIKR 461
P K C N SN YHEC +C+++
Sbjct: 9 PGKSRPDCVNSSNPYHECSDYCLRQ 33
Score = 31.5 bits (68), Expect = 0.55
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = -3
Query: 523 HRGCPNKSNIYHECXTFCIKRWKQGKLVPT 434
H C N SN YH C FC +R K P+
Sbjct: 48 HPHCINASNPYHACSNFCFRRIIHAKPSPS 77
>12_01_0794 + 7285100-7285369,7285931-7286338
Length = 225
Score = 31.9 bits (69), Expect = 0.42
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = -3
Query: 457 KQGKLVPTETYLEHKEKVLELW-PLPPGWEEVFDEGYGQHYFWNVHTNLVSWIPP 296
K+ K E + H L+L PLP WE+ D G+ Y+ N T SWI P
Sbjct: 55 KKRKHFTWEEPVSHANLELQLNDPLPLDWEQCLDLQSGRMYYLNRKTLKKSWIRP 109
>03_03_0253 +
15871870-15871949,15872101-15872170,15872666-15872701,
15873576-15873630,15873859-15873941,15874019-15874850,
15875184-15875286,15875359-15875498,15875649-15875880,
15876203-15876338,15877208-15877302,15877381-15877504,
15877690-15877812
Length = 702
Score = 31.9 bits (69), Expect = 0.42
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -3
Query: 376 WEEVFDEGYGQHYFWNVHTNLVSWIPP 296
W ++D Y ++YF+N+ T +W PP
Sbjct: 326 WRVLWDPFYSRYYFYNILTQESTWYPP 352
>11_03_0142 + 10675764-10675991,10676533-10676943
Length = 212
Score = 31.5 bits (68), Expect = 0.55
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -3
Query: 391 PLPPGWEEVFDEGYGQHYFWNVHTNLVSWIPP 296
PLP WE+ D G+ Y+ N T SW+ P
Sbjct: 64 PLPMDWEQCLDLHSGRMYYLNRKTMRKSWVRP 95
>06_03_1362 +
29571324-29571564,29571746-29571921,29571972-29572251,
29572949-29573085,29573174-29573401
Length = 353
Score = 30.7 bits (66), Expect = 0.96
Identities = 12/26 (46%), Positives = 13/26 (50%)
Frame = -3
Query: 523 HRGCPNKSNIYHECXTFCIKRWKQGK 446
H C N SN YH C +C KR K
Sbjct: 54 HPDCINASNPYHVCSEYCFKRIADAK 79
Score = 29.9 bits (64), Expect = 1.7
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -3
Query: 529 KGHRGCPNKSNIYHECXTFCIKRWKQGK 446
K C N SN +HEC +C+++ + K
Sbjct: 11 KSRPECINSSNPFHECSDYCLRKIAEAK 38
>01_05_0292 +
20518668-20519090,20519213-20519281,20520204-20520473,
20520734-20521084,20521251-20521528,20522755-20523099,
20523346-20523911,20525155-20525528
Length = 891
Score = 29.5 bits (63), Expect = 2.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = -3
Query: 388 LPPGWEEVFDEGYGQHYFWNVHTNLVSWIPPGHP 287
LP W + D G Y+WN TN+ + P P
Sbjct: 19 LPKPWRGLVDGTTGYLYYWNPETNITQYEKPLPP 52
>07_01_0789 -
6150257-6151046,6151167-6151390,6151816-6151991,
6152778-6153801
Length = 737
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 445 LVPTETYLEHKEKVLELWPLPPGWEEVFDE--GYGQHYFWNVHT 320
+ P ET +H ++ ++LW + W FD+ Y + Y +++T
Sbjct: 504 VAPRETSEQHHDRTVQLWNVVHEWHTQFDKFMTYQKQYVGSLYT 547
>06_03_1359 +
29554078-29554375,29554470-29554655,29554768-29554923,
29555557-29555694,29555789-29555909,29556339-29556345
Length = 301
Score = 28.7 bits (61), Expect = 3.9
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = -3
Query: 514 CPNKSNIYHECXTFCIKRWKQ 452
CPN N +HEC C + K+
Sbjct: 177 CPNAGNPFHECTEHCAAKMKE 197
>05_01_0084 +
562119-562411,562854-562902,563151-563162,563194-563327,
563716-566278
Length = 1016
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -3
Query: 556 PWEGFVDPVKGHRGCPNKSNIY 491
P GF DPV GH G P SN Y
Sbjct: 828 PNAGFTDPVGGH-GAPTSSNAY 848
>10_08_0959 - 21813756-21814097,21814462-21814570,21814688-21814740,
21814849-21815049,21815320-21815433,21815513-21815671,
21816490-21816849,21816928-21817149,21817967-21818093,
21818887-21819023,21819169-21819292,21819665-21820174,
21820255-21820436,21820812-21820862,21821114-21821266,
21821339-21821437,21821519-21821861,21821957-21822030,
21822105-21823025,21823133-21823257,21823419-21823461,
21823574-21823762,21824814-21825074,21825228-21825387,
21826200-21826363,21826523-21827009,21827090-21827431,
21827519-21827836,21828001-21828041,21828136-21828388,
21829158-21829261,21830198-21830386,21830543-21831196,
21831320-21831610,21831739-21831882,21832107-21832205,
21832549-21832657,21832739-21832923,21833008-21833121,
21833270-21833401,21833483-21833815,21833945-21834436,
21834773-21834847,21834917-21835066,21835143-21835241,
21835463-21835547,21837188-21837375,21837513-21837647,
21837729-21837849,21838127-21838194,21838275-21838370,
21838450-21838554,21838665-21838980,21839053-21839142,
21840011-21840181,21840850-21841010,21841088-21841270,
21841839-21841940,21842515-21842632,21842704-21842798,
21842972-21843022,21843107-21843241,21843333-21843436,
21844249-21844414,21844649-21844773,21845220-21845316
Length = 4181
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 100 VKDNDLDPMDPAXYSDVPRGNWTS 29
V+ ++DP +P S VP G WTS
Sbjct: 3038 VRVQNVDPRNPLYLSLVPHGGWTS 3061
>06_02_0046 +
10928708-10928798,10929997-10930077,10930567-10930685,
10931275-10931894,10931992-10933184,10933280-10933359,
10933751-10933846,10933931-10934004,10936007-10936151,
10936323-10936487
Length = 887
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -3
Query: 376 WEEVFDEGYGQHYFWNVHTNLVSWIPP 296
W+ + E Q Y+WN T SW P
Sbjct: 177 WKTIMHEQSNQCYYWNTVTGETSWEIP 203
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,872,461
Number of Sequences: 37544
Number of extensions: 298430
Number of successful extensions: 823
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 800
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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