Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P07
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.4  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    24   1.4  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    22   5.5  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   7.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   7.2  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   9.6  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 316  LVSWIPPGHPRAVPTE 269
            LVSW PP  P  V T+
Sbjct: 1197 LVSWRPPSQPNGVITQ 1212


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/47 (27%), Positives = 19/47 (40%)
 Frame = -3

Query: 511 PNKSNIYHECXTFCIKRWKQGKLVPTETYLEHKEKVLELWPLPPGWE 371
           PN   I+++     I RWK G       +L++ E         P WE
Sbjct: 53  PNGMQIWNDKVFITIPRWKNGVPSNLNFFLKNDESESPKLNPYPNWE 99


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 537 ILSKAIEDALIKVIFIMNVXLFVLKDGSKVNW 442
           IL    +DA I ++   ++  F+ K+G+  N+
Sbjct: 470 ILDDEHDDAFIGIVNQFHILQFITKNGTSNNY 501


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 313  VSWIPPGHPRAVPTE 269
            +SW+PP  P  + T+
Sbjct: 1232 ISWLPPLEPNGIITK 1246


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -3

Query: 313  VSWIPPGHPRAVPTE 269
            +SW+PP  P  + T+
Sbjct: 1228 ISWLPPLEPNGIITK 1242


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +1

Query: 367 LLPILVARAIALKLSPCVLNMSQSVPVYLASI 462
           L+  L+   + L+LS CV+    +  VY+ S+
Sbjct: 138 LMLYLLFATLPLRLSFCVVLACSTATVYVMSV 169


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,513
Number of Sequences: 438
Number of extensions: 3293
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)