Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P04
         (374 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   5.4  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    20   7.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   9.5  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    20   9.5  

>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = +3

Query: 177 MWVYQTTPGCSTCHELF 227
           MW    T GC+   ELF
Sbjct: 1   MWSNSLTAGCNPDSELF 17


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 10/38 (26%), Positives = 16/38 (42%)
 Frame = -2

Query: 337 DAAQEGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRK 224
           D   E  E      SKN +++    W+    EE V+ +
Sbjct: 95  DDQNESLEASVNENSKNGDDDEGHEWQADVSEEAVRAR 132


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = -3

Query: 354 MLSNSKMPPKKDAKASAKQ 298
           ++SN+ +PP+   +  +KQ
Sbjct: 674 LMSNNILPPESPTRDKSKQ 692


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 189 QTTPGCSTCHELF 227
           +TTP  S C +LF
Sbjct: 294 RTTPASSRCGQLF 306


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,925
Number of Sequences: 336
Number of extensions: 1957
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7828090
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)