Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_P04
(374 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41558-4|AAK39246.1| 117|Caenorhabditis elegans Ribosomal prote... 66 1e-11
Z81486-10|CAB03993.3| 681|Caenorhabditis elegans Hypothetical p... 29 0.82
Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical pr... 28 1.9
Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical pr... 28 1.9
AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-l... 28 1.9
AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-l... 28 1.9
U41272-9|AAA82452.4| 1256|Caenorhabditis elegans Prion-like-(q/n... 27 3.3
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 27 5.8
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 27 5.8
AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical... 27 5.8
AL033514-35|CAE18033.1| 106|Caenorhabditis elegans Hypothetical... 26 7.6
>U41558-4|AAK39246.1| 117|Caenorhabditis elegans Ribosomal protein,
small subunitprotein 25 protein.
Length = 117
Score = 65.7 bits (153), Expect = 1e-11
Identities = 38/79 (48%), Positives = 41/79 (51%)
Frame = -3
Query: 336 MPPKKDAKASAKQPQXXXXXXXXXXXXXXXXXXXXXXXXXXKLNNQVLFDKPTYEKLYKE 157
MPPKKD K P LNN VLFD+ TY+KLYKE
Sbjct: 1 MPPKKDPKGGKAPPSKKKEGSGGGKAKKKKWSKGKVRDK---LNNMVLFDQATYDKLYKE 57
Query: 156 VPQYKLITPAVVSERLKVR 100
V YKLITP+VVSERLKVR
Sbjct: 58 VITYKLITPSVVSERLKVR 76
Score = 45.2 bits (102), Expect = 2e-05
Identities = 20/30 (66%), Positives = 24/30 (80%)
Frame = -1
Query: 92 LARRALIELREKGLIKQVVQHHGQVIYTRA 3
LA+ L EL+ KGL+K VV HHGQV+YTRA
Sbjct: 79 LAKAGLKELQAKGLVKCVVHHHGQVVYTRA 108
>Z81486-10|CAB03993.3| 681|Caenorhabditis elegans Hypothetical
protein C53A5.13 protein.
Length = 681
Score = 29.5 bits (63), Expect = 0.82
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 325 EGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRK 224
E REG G + + RIRW+ +EE+V R+
Sbjct: 25 EDREGDGVDVIEVRNDAIRIRWKHDSDEEIVTRQ 58
>Z54306-5|CAD59141.1| 1012|Caenorhabditis elegans Hypothetical
protein B0457.1b protein.
Length = 1012
Score = 28.3 bits (60), Expect = 1.9
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = +2
Query: 140 SLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPPDPSFFFCVF*GCLAEAFA 319
SL CG + Y+ LS TW+ L + + H + P DP F + G + A
Sbjct: 609 SLQCGIIAVALMYMFLSALTWM--LLEGYHI-HRMLTEVFPSDPRRFTYLLVGYIPPAII 665
Query: 320 SFLGGIFELESIGRPN 367
+ + ++ + G P+
Sbjct: 666 TLVAYLYNSDGFGTPD 681
>Z54306-4|CAA91091.1| 1014|Caenorhabditis elegans Hypothetical
protein B0457.1a protein.
Length = 1014
Score = 28.3 bits (60), Expect = 1.9
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = +2
Query: 140 SLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPPDPSFFFCVF*GCLAEAFA 319
SL CG + Y+ LS TW+ L + + H + P DP F + G + A
Sbjct: 611 SLQCGIIAVALMYMFLSALTWM--LLEGYHI-HRMLTEVFPSDPRRFTYLLVGYIPPAII 667
Query: 320 SFLGGIFELESIGRPN 367
+ + ++ + G P+
Sbjct: 668 TLVAYLYNSDGFGTPD 683
>AY314771-1|AAQ84878.1| 1012|Caenorhabditis elegans latrophilin-like
protein LAT-1B protein.
Length = 1012
Score = 28.3 bits (60), Expect = 1.9
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = +2
Query: 140 SLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPPDPSFFFCVF*GCLAEAFA 319
SL CG + Y+ LS TW+ L + + H + P DP F + G + A
Sbjct: 609 SLQCGIIAVALMYMFLSALTWM--LLEGYHI-HRMLTEVFPSDPRRFTYLLVGYIPPAII 665
Query: 320 SFLGGIFELESIGRPN 367
+ + ++ + G P+
Sbjct: 666 TLVAYLYNSDGFGTPD 681
>AY314770-1|AAQ84877.1| 1014|Caenorhabditis elegans latrophilin-like
protein LAT-1A protein.
Length = 1014
Score = 28.3 bits (60), Expect = 1.9
Identities = 19/76 (25%), Positives = 33/76 (43%)
Frame = +2
Query: 140 SLYCGTSLYSFSYVGLSNNTWLFNLSRTFPLDHFFFLALPPPDPSFFFCVF*GCLAEAFA 319
SL CG + Y+ LS TW+ L + + H + P DP F + G + A
Sbjct: 611 SLQCGIIAVALMYMFLSALTWM--LLEGYHI-HRMLTEVFPSDPRRFTYLLVGYIPPAII 667
Query: 320 SFLGGIFELESIGRPN 367
+ + ++ + G P+
Sbjct: 668 TLVAYLYNSDGFGTPD 683
>U41272-9|AAA82452.4| 1256|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 62
protein.
Length = 1256
Score = 27.5 bits (58), Expect = 3.3
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -2
Query: 352 AFQFKDAAQEGREGFGQTASKNTEEEGRIRWRQSQEEEVVQRKS 221
AFQ +++ QE A NT ++ + SQ EVV ++S
Sbjct: 1077 AFQQENSPQEITYSMSNGAESNTSQQNESPLQNSQHSEVVSKQS 1120
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 26.6 bits (56), Expect = 5.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 284 RRRRKDPVAAKPRRRSGP 231
RRR+ P+ A PRRR P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 26.6 bits (56), Expect = 5.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 284 RRRRKDPVAAKPRRRSGP 231
RRR+ P+ A PRRR P
Sbjct: 478 RRRQSSPMVASPRRRRSP 495
>AC084197-45|AAK68589.4| 751|Caenorhabditis elegans Hypothetical
protein Y73B6BL.1 protein.
Length = 751
Score = 26.6 bits (56), Expect = 5.8
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 5/45 (11%)
Frame = +3
Query: 153 GLPCTVSHMWV-YQTTPGCS----TCHELFLWTTSSSWLCRHRIL 272
GL + W YQ CS TC F W W CR R++
Sbjct: 353 GLSNQYTDEWYEYQPVRHCSEQDATCDSPFYWCDMKLWRCRSRVV 397
>AL033514-35|CAE18033.1| 106|Caenorhabditis elegans Hypothetical
protein Y75B8A.37 protein.
Length = 106
Score = 26.2 bits (55), Expect = 7.6
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = +3
Query: 282 SVFFEAVWPKPSR 320
S+FF A+WPKP R
Sbjct: 71 SLFFVAIWPKPVR 83
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,038,336
Number of Sequences: 27780
Number of extensions: 186221
Number of successful extensions: 576
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 546325158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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