Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P03
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.7  
SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual     26   4.9  

>SPCPJ732.03 |meu15||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 150

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -2

Query: 459 VLPIMFKVVHLLLPL*RIFQVQMVARNLYFTI 364
           +LPI F + H  +P   IF ++M+   LY T+
Sbjct: 56  LLPIFFALEHYEVPYKWIFIIEMLYYELYLTL 87


>SPBC30D10.11 |gpi1||pig-Q|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 653

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 27/106 (25%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
 Frame = +3

Query: 21  RSKSFKIPLSSCLSKIVQSNLKIKASASRQTS*NNN*KYR*LFNSITRSRYSTEHMLFYL 200
           +  S+K  L S L +++  + +++      T  NNN K   +F    R   ST +  F+ 
Sbjct: 183 KENSWKRSLRSGLIELLNQSFEVRML----THENNNKKNSYVFRLFDRVSSSTFY--FFN 236

Query: 201 PMFIYYLFTVQ*YKTMKLLKINWFS---NENLLNIFRSLDDSGLSL 329
            +F Y++  ++    + LL IN+     + N+++IF S     L L
Sbjct: 237 SLFAYFIILLRIINEVILLAINYRPIPLSYNMMDIFVSARQVDLRL 282


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,841,552
Number of Sequences: 5004
Number of extensions: 57573
Number of successful extensions: 113
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)