Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P03
         (739 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0510 + 25039408-25039455,25040627-25040641,25040832-250409...    29   5.1  
01_07_0141 - 41390483-41391448                                         28   6.7  
01_06_0517 + 29981537-29981927,29982024-29982231,29982373-299825...    28   8.9  

>03_05_0510 +
           25039408-25039455,25040627-25040641,25040832-25040991,
           25041116-25041192,25041324-25042528,25042537-25042621,
           25043068-25043130,25043207-25043263,25043299-25043361,
           25043560-25043643,25043730-25044320,25044535-25044663
          Length = 858

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
 Frame = -3

Query: 446 CLKLYIYYCHFREY---FRFKWWH 384
           CL+ Y ++C F E+   F   WWH
Sbjct: 480 CLEKYQHFCQFYEFCAKFHLGWWH 503


>01_07_0141 - 41390483-41391448
          Length = 321

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 152 LHYALPXFNGTHAVLFTNVYLLFIY 226
           + Y +P    THA L  N+Y  FIY
Sbjct: 161 MSYVIPFLERTHAPLLANLYPYFIY 185


>01_06_0517 +
           29981537-29981927,29982024-29982231,29982373-29982544,
           29984468-29984533,29984658-29984771,29984880-29984996,
           29985097-29985223,29985317-29985603,29985701-29985891,
           29985981-29986063,29986175-29986251,29986729-29986896
          Length = 666

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 16/48 (33%), Positives = 26/48 (54%)
 Frame = -2

Query: 372 FTILNLASVTTSLQLRTSPNHPGS*KY*AGFHLKTNLSSIISLFCIIV 229
           F I+N+A   TS  L T P    +  + AG   KT +S+++   CI++
Sbjct: 382 FGIMNIAGSFTSCYLTTGPFSKSAVNFHAG--CKTPMSNVVMSVCIML 427


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,311,366
Number of Sequences: 37544
Number of extensions: 292234
Number of successful extensions: 446
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)