Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_P03
         (739 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82051-3|CAB04817.1|  337|Caenorhabditis elegans Hypothetical pr...    31   0.85 
U41278-2|AAK31509.1|  403|Caenorhabditis elegans Hypothetical pr...    29   4.5  
Z69883-1|CAA93743.1|  829|Caenorhabditis elegans Hypothetical pr...    28   6.0  

>Z82051-3|CAB04817.1|  337|Caenorhabditis elegans Hypothetical
           protein T23D5.6 protein.
          Length = 337

 Score = 31.1 bits (67), Expect = 0.85
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +3

Query: 219 LFTVQ*YKTMKLLKINWFSNENLLNIFRSLDDS 317
           ++ +  Y+     ++NWF N  +L IFR  D+S
Sbjct: 304 MYVITDYRRAFQCELNWFENSKILKIFRCCDES 336


>U41278-2|AAK31509.1|  403|Caenorhabditis elegans Hypothetical
           protein F33G12.3 protein.
          Length = 403

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +1

Query: 37  KFLCRLVSQKLFNQILKLKPRPLXKQVETTIKSI 138
           KFL    ++ ++  ++++ PRPL +Q E T K I
Sbjct: 370 KFLTHSRAKHIYFDVIEIPPRPLTEQKEATAKVI 403


>Z69883-1|CAA93743.1|  829|Caenorhabditis elegans Hypothetical
           protein C27C12.7 protein.
          Length = 829

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 322 KPESSRLLKILSRFSFENQFIFNNFIVLYY 233
           KP+ S L+    RF+FE  F    F+V YY
Sbjct: 76  KPKFSSLMTTTRRFTFEQLFSGKQFLVDYY 105


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,536,478
Number of Sequences: 27780
Number of extensions: 311824
Number of successful extensions: 793
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)