Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_O24
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   2.9  
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo...    26   5.0  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    26   5.0  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   8.8  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    25   8.8  

>SPAC458.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 340

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/45 (40%), Positives = 23/45 (51%)
 Frame = +3

Query: 513 ICLNHFCVEKSRSDLIFDHHTLASSHHFILALLQHTQLSSVTSSI 647
           I LN   V K     +  H ++ +S  FIL  L+ T LS  TSSI
Sbjct: 150 ILLNFTVVLKQLKHALGLHTSVDNSQEFILQFLRTTLLSVPTSSI 194


>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
           Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -1

Query: 542 FFNTKMI*TNWCVVFYFIFDLSRVLYIQYVFK*VV*RFFCPIIIHWM 402
           FF    I  + C+  ++++D+   L ++  F+  + RFFC I   ++
Sbjct: 250 FFTFLSIGLSVCLELWYLWDIKTGLTVERFFQHFLARFFCLIFFPFL 296


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1367

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = -2

Query: 229  ATHSTCSKSMCLNAFFNCLKLLYTPKKCIVVYNQFICLSAKYYNKNVSIL 80
            A H + S++ C    F C+ +L T   C++    +ICL   +Y +++ +L
Sbjct: 1269 AFHKSASRT-CQTFGFWCVTVL-TIALCLLPRFSYICLQKLFYPRDIDLL 1316


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 425 CPIIIHWMRNSAKNYSYLYECI 360
           C  I+  M+   KN S+LY+CI
Sbjct: 112 CTYILEQMQVVTKNTSHLYDCI 133


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 727 SEKWHAACWLYATIFPGSFRNEV*NIEIDDV 635
           S+KW   C L    FP   R  +  +E +D+
Sbjct: 168 SKKWKVGCKLAYEFFPKDLRKRLQKLETEDM 198


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,180,623
Number of Sequences: 5004
Number of extensions: 68177
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)