Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_O24
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   3.1  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              23   3.1  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    23   3.1  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.1  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   3.1  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   4.1  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    22   5.4  
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   7.1  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   7.1  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   7.1  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   7.1  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   7.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.4  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   9.4  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 564 QILDQIYFFQHKNDLNK 514
           QI  + YFF HK  LN+
Sbjct: 252 QIRGEFYFFLHKQVLNR 268


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 128 LVIDNNTLLWCIQKFKTIKKSI 193
           L + +  LL CI K+KT+K+ +
Sbjct: 112 LAVKSAKLLKCIGKYKTLKEML 133


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -3

Query: 141 LSITNLSVYQLNIIIKMYPF*FVSGNIVVYPCVLFITV 28
           LS+TN+ +    + IK     FV+  +    C LF+ +
Sbjct: 257 LSLTNIQLEHFEMKIKRKHNVFVNNILAASACSLFVVI 294


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 564 QILDQIYFFQHKNDLNK 514
           QI  + YFF HK  LN+
Sbjct: 252 QIRGEFYFFLHKQVLNR 268


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 672 NEPGKIVAYSQHAACHFSLERHLR 743
           NEP +     ++ +C++SL+RH +
Sbjct: 3   NEPQECPYCRRNFSCYYSLKRHFQ 26


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +1

Query: 43  HTWINHDISTYKLKW 87
           + W+  + + YKLKW
Sbjct: 70  NVWVEQEWNDYKLKW 84


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 396 ISHPVNNYRTKKSLNNSFKNVLYVENSTE 482
           IS   NNY      NN++K + Y  N  E
Sbjct: 82  ISSLSNNYNYSNYNNNNYKQLCYNINHIE 110


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 396 ISHPVNNYRTKKSLNNSFKNVLYVENSTE 482
           IS   NNY      NN++K + Y  N  E
Sbjct: 82  ISSLSNNYNYSNYNNNNYKQLCYNINYIE 110


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 396 ISHPVNNYRTKKSLNNSFKNVLYVENSTE 482
           IS   NNY      NN++K + Y  N  E
Sbjct: 82  ISSLSNNYNYSNYNNNNYKQLCYNINYIE 110


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 396 ISHPVNNYRTKKSLNNSFKNVLYVENSTE 482
           IS   NNY      NN++K + Y  N  E
Sbjct: 82  ISSLSNNYNYSNYNNNNYKQLCYNINYIE 110


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 396 ISHPVNNYRTKKSLNNSFKNVLYVENSTE 482
           IS   NNY      NN++K + Y  N  E
Sbjct: 82  ISSLSNNYNYSNYNNNNYKQLCYNINYIE 110


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +3

Query: 396 ISHPVNNYRTKKSLNNSFKNVLYVENSTE 482
           IS   NNY      NN++K + Y  N  E
Sbjct: 82  ISSLSNNYNYSNYNNNNYKQLCYNINYIE 110


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -2

Query: 478 VEFSTYNTFLNELFKDFFVL*LFTG*EILPKIIVIYMNVYYL---KLRECNYIVTSGVKL 308
           V   +YN F N ++KD  ++        +   IVI+  V ++   + +    +  SG  L
Sbjct: 299 VALGSYNKFNNNVYKDALIVCTVNSCTSMLSGIVIFSVVGFMAHEQQKPVADVAVSGPGL 358

Query: 307 AF 302
           AF
Sbjct: 359 AF 360


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 16/62 (25%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -2

Query: 478 VEFSTYNTFLNELFKDFFVL*LFTG*EILPKIIVIYMNVYYL---KLRECNYIVTSGVKL 308
           V   +YN F N ++KD  ++        +   IVI+  V ++   + +    +  SG  L
Sbjct: 352 VALGSYNKFNNNVYKDALIVCTVNSCTSMLSGIVIFSVVGFMAHEQQKPVADVAASGPGL 411

Query: 307 AF 302
           AF
Sbjct: 412 AF 413


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 590 PFHTCIVATHTTVICDIINFNILHFIS 670
           P  T I+   +T    I+N++I+ F+S
Sbjct: 553 PGDTSIIVDSSTSGATIVNYSIMIFLS 579


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,587
Number of Sequences: 438
Number of extensions: 4983
Number of successful extensions: 27
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)