Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_O22
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    28   1.1  
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb...    26   4.3  
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa...    26   5.6  
SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|...    25   9.9  
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|...    25   9.9  

>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 23/91 (25%), Positives = 35/91 (38%)
 Frame = -3

Query: 402 LDNCLHGKIVLICNHL*CTITSARQLNEKYSKYKLTIFECVKSVISFLFC*PPIFKPNVD 223
           LD CL    ++ C H  C    +  + +KY            S  S +    P+ + N+ 
Sbjct: 610 LDPCLAPVFIIPCGHFTCQECMSMLVGQKYG----------SSSTSTIIAKCPMCRGNIV 659

Query: 222 VFSPVILIIILVIHTPCWRLRHFQFSFKQSF 130
             S V   I+  IH P   L+  +    QSF
Sbjct: 660 QDSLVDATILQAIHGPLNSLKQLELDMNQSF 690


>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 401

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 269 ITDLTHSKIVNLYLEYFSLSCLAEVIVHY 355
           + DL  + I+N YLE+ S S L  +I  Y
Sbjct: 106 LEDLNPNVIINTYLEFASASNLFSIIEQY 134


>SPAC19E9.02 |fin1||serine/threonine protein kinase
           Fin1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 722

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +2

Query: 287 SKIVNLYLEYFSLSCLAEVIVHYK 358
           ++++NLY+EY     LA +I  YK
Sbjct: 75  AQVINLYMEYCGHGDLANLIQRYK 98


>SPCC162.04c |wtf13||wtf element Wtf13|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 418

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -3

Query: 216 SPVILIIILVIHTPCWRLRHFQFSFKQSFHIKT 118
           S  +  I+L++  P W L+H  F   Q   +++
Sbjct: 246 SAALFFILLLVCIPIWTLKHMLFGLFQVLGVQS 278


>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -3

Query: 216 SPVILIIILVIHTPCWRLRHFQFSFKQSFHIKT 118
           S  +  I+L++  P W L+H  F   Q   +++
Sbjct: 236 SAALFFILLLVCIPIWTLKHMLFGLFQVLGVQS 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,350,444
Number of Sequences: 5004
Number of extensions: 42028
Number of successful extensions: 75
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)