Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_O22
         (668 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49966-5|CAA90245.1|  445|Caenorhabditis elegans Hypothetical pr...    29   2.3  
AF016686-11|AAB66235.1|  205|Caenorhabditis elegans Hypothetical...    29   3.0  

>Z49966-5|CAA90245.1|  445|Caenorhabditis elegans Hypothetical
           protein F35C11.5 protein.
          Length = 445

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 10/61 (16%)
 Frame = -3

Query: 189 VIHTP---CWRLRHFQFSFKQSFHIKTTHSRF-----SRHRTECSNGAVF--SNNVLLLN 40
           +IHTP   C   ++FQ   ++ F +KTT  RF     S ++      ++F   N+ LLLN
Sbjct: 1   MIHTPRKLCSLFQNFQLGTREIFFVKTTEDRFHSIFLSAYKPNKFISSIFVCCNSFLLLN 60

Query: 39  Y 37
           +
Sbjct: 61  F 61


>AF016686-11|AAB66235.1|  205|Caenorhabditis elegans Hypothetical
           protein R07C3.5 protein.
          Length = 205

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = -3

Query: 327 LNEKYSKYKLTIFECVKSVISFLFC*PPIFKPNVDVFSPVILII--ILVIHTPCWRLRHF 154
           + EKY ++  T  E V    ++    PP F  N+D FS +++       I TP WRL +F
Sbjct: 142 VKEKYEEFLSTFEERVSWRTNY----PPCFAINIDNFSEIVIGYEEFQQISTPEWRL-NF 196

Query: 153 QFSFKQSF 130
           +   ++ F
Sbjct: 197 KVQKREEF 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,724,647
Number of Sequences: 27780
Number of extensions: 228800
Number of successful extensions: 437
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)