Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_O17
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein L22|Schizosa...    66   2e-12
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    29   0.41 
SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr 1|||M...    27   1.3  
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc...    25   3.9  
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    24   8.9  
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar...    24   8.9  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    24   8.9  

>SPAC11E3.15 |rpl22|SPAP8A3.01|60S ribosomal protein
           L22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 66.5 bits (155), Expect = 2e-12
 Identities = 33/65 (50%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
 Frame = -1

Query: 192 KFTIDCTHPAEDSILDVGXFEKYLKEHVKVEGKTNNLSNHVVVARD-KTKVAITADIPFS 16
           K+ ID T    D I DV  FEKYL + +KV+GKT NL + VVV+R+  +K+A+ A I FS
Sbjct: 11  KYIIDATAAVNDKIFDVAAFEKYLIDRIKVDGKTGNLGSSVVVSREGSSKIAVIAHIDFS 70

Query: 15  KRXLK 1
            R LK
Sbjct: 71  GRYLK 75


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 28.7 bits (61), Expect = 0.41
 Identities = 11/41 (26%), Positives = 22/41 (53%)
 Frame = +1

Query: 22  RNVCGDSDFRLIPGDDNVIA*VICFALNFDVFLQVFLEVTY 144
           R + G+S F ++P     +   IC  L   V +++F++ T+
Sbjct: 300 RGLVGESSFAVLPNIPPALTFYICLGLQITVLIKLFIKPTW 340


>SPAC3F10.07c |mug91||dubious|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 208 LDAFAADFATLHSFXASLLVQLGFLS 285
           +D +  DFAT H+   + L  +GFLS
Sbjct: 87  IDLYILDFATQHNLYVASLRNMGFLS 112


>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1573

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 9/30 (30%), Positives = 20/30 (66%)
 Frame = -1

Query: 111  VKVEGKTNNLSNHVVVARDKTKVAITADIP 22
            +K+ G  NNL++++ +   +T++  + DIP
Sbjct: 1210 IKLVGMANNLNDNLELEEFRTRITNSMDIP 1239


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 167 GCVQSIVNFKLIFR-LMPLPRILPPFTPF 250
           G +++I    ++F  L  L RI+ PFTPF
Sbjct: 743 GEIETINALNVLFEVLFTLVRIMGPFTPF 771


>SPBC530.10c |anc1||adenine nucleotide carrier
           Anc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 322

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 262 LVQLGFLSHRFLCYCHCGKRTRVEQ 336
           +++ G LSHR+     C KRT  E+
Sbjct: 61  MIRAGRLSHRYKGIGECFKRTAAEE 85


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 24.2 bits (50), Expect = 8.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 10  PL*KRNVCGDSDFRLIPGDDNVIA 81
           P+ K  V G SDF L PG ++ +A
Sbjct: 159 PIAKLRVEGISDFALSPGQNHAVA 182


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,560,538
Number of Sequences: 5004
Number of extensions: 26206
Number of successful extensions: 50
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)