Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_O16
(724 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73102-6|CAA97412.1| 522|Caenorhabditis elegans Hypothetical pr... 30 1.5
AF047661-4|AAC04435.2| 931|Caenorhabditis elegans Hypothetical ... 30 1.9
AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein. 28 5.9
AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein. 28 5.9
AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cel... 28 5.9
AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cel... 28 5.9
Z68117-4|CAA92180.1| 589|Caenorhabditis elegans Hypothetical pr... 28 7.8
U21310-2|AAA62521.1| 322|Caenorhabditis elegans T box family pr... 28 7.8
AC024807-1|AAF59529.5| 704|Caenorhabditis elegans Hypothetical ... 28 7.8
>Z73102-6|CAA97412.1| 522|Caenorhabditis elegans Hypothetical
protein B0035.5 protein.
Length = 522
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -3
Query: 683 EKPSATDAEGSXDSAAIIPNMVKKIDLAPTVESDAAAVPEIKTPEAADAPKLADN-PVDE 507
EKP++ +AE D + K ++L V A PE PEA+ K + P D
Sbjct: 280 EKPASLNAEDIRDEKVKVLKAAKVVELKDVVVGQYIASPEFDHPEASQGYKDDKSVPADS 339
Query: 506 DKP 498
P
Sbjct: 340 TTP 342
>AF047661-4|AAC04435.2| 931|Caenorhabditis elegans Hypothetical
protein M70.1 protein.
Length = 931
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -3
Query: 617 KKIDLAPTVESDAAAVPEIKTPEAADAPKLADNPVDEDKPADI 489
KK D P+ VP TP+ A P P ++KP D+
Sbjct: 812 KKKDTKPSAPKPKPDVPVNPTPQTAKVPVAPAPPAKDEKPKDV 854
>AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein.
Length = 691
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = -3
Query: 704 VXEISKEEKPSATDAEGSXDSAAIIPNMVKKIDLAPTVESDAAAVPEIKTPEAADAPKLA 525
V ++ ++E + E + AA P AP E+ A+ P+ + PE D P +
Sbjct: 29 VIDMDEDEDVTTDGPESQEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 88
Query: 524 DNP 516
P
Sbjct: 89 GAP 91
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = -3
Query: 719 EVQATVXEISKEEKPSATDAEGSXDSAAIIPNMVKKIDLAPTVES----DAAAVPEIKTP 552
EVQ V + S SA +E S SA +P + D +S DA+A + P
Sbjct: 80 EVQ-DVPDSSGAPDASAQASEASDASAPEVPGSTEAQDAQDVPDSLGASDASAQEIPEAP 138
Query: 551 EAADAPKLADNPVDED 504
EA +AP++A +DE+
Sbjct: 139 EAPEAPEIAAE-IDEE 153
>AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein.
Length = 728
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = -3
Query: 704 VXEISKEEKPSATDAEGSXDSAAIIPNMVKKIDLAPTVESDAAAVPEIKTPEAADAPKLA 525
V ++ ++E + E + AA P AP E+ A+ P+ + PE D P +
Sbjct: 66 VIDMDEDEDVTTDGPESQEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 524 DNP 516
P
Sbjct: 126 GAP 128
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = -3
Query: 719 EVQATVXEISKEEKPSATDAEGSXDSAAIIPNMVKKIDLAPTVES----DAAAVPEIKTP 552
EVQ V + S SA +E S SA +P + D +S DA+A + P
Sbjct: 117 EVQ-DVPDSSGAPDASAQASEASDASAPEVPGSTEAQDAQDVPDSLGASDASAQEIPEAP 175
Query: 551 EAADAPKLADNPVDED 504
EA +AP++A +DE+
Sbjct: 176 EAPEAPEIAAE-IDEE 190
>AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform b protein.
Length = 512
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = -3
Query: 704 VXEISKEEKPSATDAEGSXDSAAIIPNMVKKIDLAPTVESDAAAVPEIKTPEAADAPKLA 525
V ++ ++E + E + AA P AP E+ A+ P+ + PE D P +
Sbjct: 66 VIDMDEDEDVTTDGPESQEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 524 DNP 516
P
Sbjct: 126 GAP 128
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = -3
Query: 719 EVQATVXEISKEEKPSATDAEGSXDSAAIIPNMVKKIDLAPTVES----DAAAVPEIKTP 552
EVQ V + S SA +E S SA +P + D +S DA+A + P
Sbjct: 117 EVQ-DVPDSSGAPDASAQASEASDASAPEVPGSTEAQDAQDVPDSLGASDASAQEIPEAP 175
Query: 551 EAADAPKLADNPVDED 504
EA +AP++A +DE+
Sbjct: 176 EAPEAPEIAAE-IDEE 190
>AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform a protein.
Length = 728
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/63 (25%), Positives = 27/63 (42%)
Frame = -3
Query: 704 VXEISKEEKPSATDAEGSXDSAAIIPNMVKKIDLAPTVESDAAAVPEIKTPEAADAPKLA 525
V ++ ++E + E + AA P AP E+ A+ P+ + PE D P +
Sbjct: 66 VIDMDEDEDVTTDGPESQEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 524 DNP 516
P
Sbjct: 126 GAP 128
Score = 28.3 bits (60), Expect = 5.9
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Frame = -3
Query: 719 EVQATVXEISKEEKPSATDAEGSXDSAAIIPNMVKKIDLAPTVES----DAAAVPEIKTP 552
EVQ V + S SA +E S SA +P + D +S DA+A + P
Sbjct: 117 EVQ-DVPDSSGAPDASAQASEASDASAPEVPGSTEAQDAQDVPDSLGASDASAQEIPEAP 175
Query: 551 EAADAPKLADNPVDED 504
EA +AP++A +DE+
Sbjct: 176 EAPEAPEIAAE-IDEE 190
>Z68117-4|CAA92180.1| 589|Caenorhabditis elegans Hypothetical
protein F45E6.2 protein.
Length = 589
Score = 27.9 bits (59), Expect = 7.8
Identities = 26/88 (29%), Positives = 37/88 (42%), Gaps = 4/88 (4%)
Frame = -1
Query: 349 PQKVRNHLTNPNLKKTNLR*TAEALSGGRVLTVFDTRPLLAANTLTRAPL---PTREIN- 182
P V N+L N T+ GRV+T D+ P+ A T+ P+ P N
Sbjct: 342 PFNVDNNLNINNQIMAISNETSMVARHGRVITYEDSAPV--AKIPTQQPIHNYPNSTQND 399
Query: 181 CSIYV*NYPM*VRVAFSTPRWITVYFLD 98
C +Y N +RV RW+ V+ D
Sbjct: 400 CDMYKLNATETIRVNNDIERWVQVHSFD 427
>U21310-2|AAA62521.1| 322|Caenorhabditis elegans T box family
protein 11 protein.
Length = 322
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -3
Query: 689 KEEKPSATDAEGSXDSAAIIPNMVKKI-DLAPTVESDAAAVPEIKTPEAADAPKLADNPV 513
+ E+ S +EG+ +I P KKI D+AP + D + + + ++ P +A+ P
Sbjct: 188 RRERQSPVYSEGTSSEKSISPPPAKKIKDMAPAL-PDYSVISKPNLLQSLIFPMIAEQPS 246
Query: 512 DEDKP 498
P
Sbjct: 247 TSQSP 251
>AC024807-1|AAF59529.5| 704|Caenorhabditis elegans Hypothetical
protein Y53G8AL.1 protein.
Length = 704
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/44 (31%), Positives = 24/44 (54%)
Frame = -3
Query: 620 VKKIDLAPTVESDAAAVPEIKTPEAADAPKLADNPVDEDKPADI 489
V +DL T E+ +PEI TP D+ + +N V+ + ++I
Sbjct: 289 VPSLDLEETTENPE--IPEISTPREEDSAENLENLVENSEKSEI 330
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,488,048
Number of Sequences: 27780
Number of extensions: 187767
Number of successful extensions: 526
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -