Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_O15
         (409 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0663 + 10256898-10258915,10259162-10259248,10259463-102597...    28   2.5  
10_06_0087 - 10520708-10520823,10521041-10521130,10521571-105219...    27   5.7  
08_02_1460 + 27295201-27295269,27295968-27296074,27296252-272963...    27   7.6  

>03_02_0663 +
           10256898-10258915,10259162-10259248,10259463-10259724,
           10259802-10260111,10260535-10260645,10260861-10261090
          Length = 1005

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 111 QPVTFSVASLTVCLFHAPVL--ALVIRLPMPC 200
           QP + SV S +VC  HAP    A V   P+PC
Sbjct: 49  QPRSLSVRSASVCYPHAPSTSGAFVADSPLPC 80


>10_06_0087 -
           10520708-10520823,10521041-10521130,10521571-10521901,
           10522248-10522409,10522506-10522726,10523852-10524056
          Length = 374

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 268 NIFMKYARVELAPPKLSELPQIRQGIGNLITSAKTGAWK 152
           N+F+    + L  P+ S+ PQ  +   N I  +KTG WK
Sbjct: 53  NVFVGM-NISLIDPRNSDDPQSPKNGENAIIKSKTGYWK 90


>08_02_1460 +
           27295201-27295269,27295968-27296074,27296252-27296384,
           27296621-27296714,27296828-27297030,27297167-27297240,
           27297331-27297406,27297530-27297585,27297939-27298026,
           27298115-27298255,27298338-27298487,27299015-27299221
          Length = 465

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
 Frame = +3

Query: 45  RLQQGAVCQCIHQCXTXXCLQLQPVT---FSVASLTVCLFHAPVLALV 179
           +L Q      +  C    C + + +    FS++    C+FH+P   LV
Sbjct: 207 KLSQTCYLMALDSCYRQYCTKYEKIVGEQFSISDAEYCVFHSPYNKLV 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,939,413
Number of Sequences: 37544
Number of extensions: 134179
Number of successful extensions: 261
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 261
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)