Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_O14
         (322 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    24   6.6  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    24   6.6  
SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces pomb...    23   8.7  

>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +2

Query: 101 QGISGAIIRSSYDLFSENVVLFVLSIINFMTLP 199
           QGI    + + Y  FS+N+V  ++ ++N + LP
Sbjct: 159 QGIQAQTLSNFYMAFSQNLV--IIPVLNKVDLP 189


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +2

Query: 131 SYDLFSENVVLFVLSIINF 187
           SYDL S+++ + V+S +NF
Sbjct: 459 SYDLMSKSLFISVVSTLNF 477


>SPBC1539.03c |||argininosuccinate lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 460

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 8/31 (25%), Positives = 19/31 (61%)
 Frame = +2

Query: 116 AIIRSSYDLFSENVVLFVLSIINFMTLPDIY 208
           +++ +     +E+++++  S  NF+TL D Y
Sbjct: 247 SMVMTHISRLAEDLIIYSTSEFNFVTLSDAY 277


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,171,891
Number of Sequences: 5004
Number of extensions: 20287
Number of successful extensions: 47
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)