Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_O14
         (322 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   1.6  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   1.6  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    22   2.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   2.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   4.8  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   4.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   4.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   6.4  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 127 SNYRPRNPLYTKFYENRWSRFRDSDYISTYILIYKNF 17
           +NY+  N  Y   Y N ++   +++Y + Y  +YKN+
Sbjct: 87  NNYKYSN--YNN-YNNNYNNNYNNNYNNNYKKLYKNY 120


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -1

Query: 127 SNYRPRNPLYTKFYENRWSRFRDSDYISTYILIYKNF 17
           +NY+  N  Y   Y N ++   +++Y + Y  +YKN+
Sbjct: 87  NNYKYSN--YNN-YNNNYNNNYNNNYNNNYKKLYKNY 120


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.8 bits (44), Expect = 2.1
 Identities = 8/29 (27%), Positives = 16/29 (55%)
 Frame = -1

Query: 130 RSNYRPRNPLYTKFYENRWSRFRDSDYIS 44
           + N +PR P  T+   +   +FR+  Y++
Sbjct: 7   KPNRKPRTPFTTQQLLSLEKKFREKQYLT 35


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 115 PRNPLYTKFYENRWSRFRDSDYISTY 38
           PR+ L  K Y+    R RD+   ST+
Sbjct: 620 PRSTLRNKVYKLAMERERDASLSSTH 645


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -1

Query: 61  DSDYISTYILIYKNF 17
           + DYI  Y+ + KNF
Sbjct: 442 NGDYIRRYLPVLKNF 456


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = -1

Query: 136 VARSNYRPRNP 104
           VARSN  PR+P
Sbjct: 906 VARSNVTPRSP 916


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = -1

Query: 223 YYYSPIDVGK 194
           +YYSP++ GK
Sbjct: 793 FYYSPVEDGK 802


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic
          acetylcholine receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -1

Query: 91 FYENRWSRFRDSDYISTYILIYKNF 17
          F++N  S   D+++  +Y+L  KN+
Sbjct: 14 FWQNSASLENDNEFGFSYLLNCKNY 38


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 76,172
Number of Sequences: 438
Number of extensions: 1293
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)