Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_O13
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...    26   5.7  
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...    26   5.7  
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...    26   5.7  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.5  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    25   9.9  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    25   9.9  

>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 36  KKVVSSSLRRLIALPCGGLSLCRPLXXGLRXKHGHTTPLSILIEWPK 176
           KKVV SS R ++ +  GG  + +PL    R  H +    +    WP+
Sbjct: 154 KKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNC---WPR 197


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 36  KKVVSSSLRRLIALPCGGLSLCRPLXXGLRXKHGHTTPLSILIEWPK 176
           KKVV SS R ++ +  GG  + +PL    R  H +    +    WP+
Sbjct: 154 KKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNC---WPR 197


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 15/47 (31%), Positives = 23/47 (48%)
 Frame = +3

Query: 36  KKVVSSSLRRLIALPCGGLSLCRPLXXGLRXKHGHTTPLSILIEWPK 176
           KKVV SS R ++ +  GG  + +PL    R  H +    +    WP+
Sbjct: 154 KKVVPSSARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNC---WPR 197


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -3

Query: 314 IYRNVIISFLFSEL*IYLFFCFSTYFILEGGCCSIFFLSFWPG 186
           +Y ++IIS L   +   LF    +YF+L+G    IF+ + W G
Sbjct: 214 LYHSMIISLLPDGI-RNLFLKAISYFLLDGSSSKIFYFN-WLG 254


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 512  SCLKLFSSADMLSLVAVCSVXNHVLSY 592
            SC  +FS+A   S V VC   N ++SY
Sbjct: 1265 SCEIIFSNAYERSSVCVCREVNELISY 1291


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = -3

Query: 392 SKERCHVQSSSEHD*RTSTM*CQRRDIYRNV 300
           +K++C++  S +      T+ C  RDIY+ +
Sbjct: 394 TKDQCYISKSVDATSHFETLTCDVRDIYKRM 424


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,331,023
Number of Sequences: 5004
Number of extensions: 40176
Number of successful extensions: 80
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)