Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_O10
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    51   2e-07
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    32   0.099
SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomy...    29   0.92 
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    27   2.1  
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc...    27   3.7  
SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein Rrp12|Sch...    26   6.5  

>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 51.2 bits (117), Expect = 2e-07
 Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
 Frame = -1

Query: 707 DVQRKLHQEIDDIIGRDRN-PL-LDDRIRMVYTEAVILETLRISTVASMGIPHMALNDAK 534
           DV +K+ +E   I   D + PL LD   +M YT AV+ E LR+     M +P+       
Sbjct: 340 DVLQKVREEQLRIRKGDIDVPLSLDLMEKMTYTRAVVKECLRLRPPVLM-VPYRVKKAFP 398

Query: 533 LG-NYIIPKGTFILLSLY-ELHHGPHWKDPETFRPERFLTKEGNILQD--EWLIPFGIGK 366
           +  +Y +PK   ++ +LY  LH    + +PETF P+R+    G   Q    W++ FG G 
Sbjct: 399 ITPDYTVPKDAMVIPTLYGALHDSKVYPEPETFNPDRW-APNGLAEQSPKNWMV-FGNGP 456

Query: 365 RRCIGEGLARSEL 327
             C+G+  A + L
Sbjct: 457 HVCLGQRYAVNHL 469


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 31.9 bits (69), Expect = 0.099
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = -1

Query: 386 IPFGIGKRRCIGEGLARSELFMFLTHILQKF 294
           +PFG G+ RCIGE  A    +M L+ I+ KF
Sbjct: 433 LPFGAGRHRCIGEQFA----YMHLSTIISKF 459


>SPAC24B11.11c |sid2||Sid2p-Mob1p kinase complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 607

 Score = 28.7 bits (61), Expect = 0.92
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = -2

Query: 316 LLISFKNSTSEYLKMNRCRQLNPSMDFHCLLSNSGLFSNREKHLRVF 176
           LL +F+++++ YL M    +  P  DF  LLSNSG+   R+ H + +
Sbjct: 271 LLYAFQDTSNIYLAM----EFVPGGDFRTLLSNSGVL--RDHHAKFY 311


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 20/60 (33%), Positives = 30/60 (50%)
 Frame = +1

Query: 271 SFLGILRWNF*RI*VRNMNSSERANPSPIHRRFPIPKGMSHSSCKMLPSLVRNRSGRNVS 450
           S   ILRW+F ++  +N  SS  +N SP   ++ I K +   +C     LV N + R  S
Sbjct: 124 SIFSILRWSFQKLGFQNQASSILSNRSP-SGQYVIRKNIEKLAC-----LVHNEAMRRCS 177


>SPAC31A2.14 |||WD repeat protein, human WRDR48
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 962

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 567 HRCDSRYPQSFKNYRFCVHHSYSVVKQRITIATDYVIY 680
           H C + Y    ++  + +HH+ S     +T   DYVI+
Sbjct: 368 HSCPTLYHDDAEDIYYDLHHTESYSNINLTKTPDYVIH 405


>SPBC1105.01 |rrp12|SPBPB7E8.03|rRNA processing protein
           Rrp12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1001

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -2

Query: 337 ALNCSCSLLISFKNSTSE-YLK 275
           ALNC+   L+SF N + E YLK
Sbjct: 113 ALNCTQEFLLSFSNESKELYLK 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,114,884
Number of Sequences: 5004
Number of extensions: 68469
Number of successful extensions: 200
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)