Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_O09
         (696 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0041 - 20169308-20169317,20169485-20170491                       39   0.004
12_02_0114 - 13805646-13805665,13806062-13806194,13806633-138069...    29   2.7  
06_03_1117 + 27750291-27750338,27751360-27751812,27751987-277521...    29   3.5  
11_06_0607 + 25437897-25438046,25438180-25438236,25438522-254386...    29   4.7  
12_01_0951 - 9471391-9471597,9471857-9471966,9473173-9473278,947...    28   8.1  
11_05_0012 - 18380988-18381285,18382394-18382434                       28   8.1  

>03_05_0041 - 20169308-20169317,20169485-20170491
          Length = 338

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 4/95 (4%)
 Frame = -2

Query: 614 LFIILAGFLYIRRNNLEFLYN-KQLWAVCAVFFCFAMVSGQMWNQIRGPPFFHRTKTGP- 441
           LF++   FL  R  + E L++ +++W   A+F  F  VSG M+  IR  P F   ++ P 
Sbjct: 191 LFLVSIPFLIKRIMDGETLFHDRRVWMAGALFIYFFSVSGGMYGIIRHTPMFITDRSDPN 250

Query: 440 --VYINGGSHGQFVLESYIVAILNGAVVVGMILMI 342
             V+   GS  Q   E + V  L   V + MI M+
Sbjct: 251 KLVFFYQGSGMQLGAEGFAVGFLYTLVGL-MIAMV 284


>12_02_0114 -
           13805646-13805665,13806062-13806194,13806633-13806975,
           13807375-13807583,13807995-13808243
          Length = 317

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = -3

Query: 331 VELKTMTQHEPWPKGSVEGSSQLLV*Y*SACSSHCFYQYSEQRRK 197
           ++L +M + + W  G + G    LV   S CSS C+Y  +   RK
Sbjct: 97  IDLGSMGKGQAWVNGHLIGRYWSLVAPESGCSSSCYYPGAYNERK 141


>06_03_1117 +
           27750291-27750338,27751360-27751812,27751987-27752161,
           27752227-27752551,27752705-27752786,27752820-27752889,
           27753341-27753420,27753514-27753750
          Length = 489

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 6/77 (7%)
 Frame = +1

Query: 178 KKLYGYPCVFALNTDKSSEKNTQTNIRPTTD-----WNLRRFPSA-RVRVGSWFLTPPAA 339
           K+ +  P      +DK+S    Q N  PTTD       +RR  S    R         + 
Sbjct: 137 KRTHSLPVTPIATSDKTSSPANQINNLPTTDDQDVQARIRRSLSVPGNRKNRSLRRADSL 196

Query: 340 SIIRIIPTTTAPFSIAT 390
            +IR+IPTT  P  + T
Sbjct: 197 GVIRVIPTTPRPIPVNT 213


>11_06_0607 +
           25437897-25438046,25438180-25438236,25438522-25438602,
           25438720-25438777,25438888-25438991,25439064-25439115,
           25439232-25439281,25440279-25440443,25440531-25440603,
           25440714-25440846,25441146-25441203,25441411-25441458,
           25441593-25441676,25441803-25441868,25442419-25442502
          Length = 420

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +2

Query: 512 QSRRTQHKLPITVYCRGTRGCFYGYKENQPI**RELKKLQPLSNLVIGRLESVHQXC 682
           +S R Q KL +    R  +   Y YK+N+ +    LK    L+  ++G +ES  Q C
Sbjct: 318 ESIRNQRKLQVGTGARSEKIRTYNYKDNR-VTDHRLKMNFELTGFLMGDIESAVQSC 373


>12_01_0951 -
           9471391-9471597,9471857-9471966,9473173-9473278,
           9474719-9475060,9475598-9475647,9476745-9477717
          Length = 595

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 423 SPVYIDRASFCSMEKWWASNLIPH 494
           S V I  +SFCS+  WW ++ I H
Sbjct: 160 SNVIIGCSSFCSITDWWGADPIVH 183


>11_05_0012 - 18380988-18381285,18382394-18382434
          Length = 112

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -2

Query: 434 INGGSHGQFVLESYIVAILNGAVVVGMILMIEAAGGVKNHDPTRTLAEGKRR 279
           I G  HG+ VL   ++ I  GA +  ++L    +GG +   P+     G  R
Sbjct: 15  ITGSVHGENVLLDKLIHIRGGATMSEVVLDASGSGGDEGGKPSSLRKRGAGR 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,452,072
Number of Sequences: 37544
Number of extensions: 386847
Number of successful extensions: 845
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)