Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_O07
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subu...    42   5e-05
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |...    27   1.1  
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil...    27   1.1  
SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...    26   2.0  
SPBC146.10 |mug57||meiotically upregulated gene Mug57|Schizosacc...    26   2.0  
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...    26   2.0  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    25   3.4  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    25   6.0  

>SPAC1782.07 |qcr8||ubiquinol-cytochrome-c reductase complex subunit
           7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 92

 Score = 41.5 bits (93), Expect = 5e-05
 Identities = 23/59 (38%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = -3

Query: 281 KIRGLVTYKISAHEQRAYAGAISNGIPNXFRRFRESVFKVAPPXXIGYLIY-EGVEREQ 108
           K +G++TY +S  +QR  AG       N FRR       VA P  I Y IY  G ER +
Sbjct: 21  KQKGIITYSLSPFQQRPMAGFFKTSTQNMFRRVMTEGLYVAIPFGIAYYIYCWGKERNE 79


>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 86  VLPCLVCAAPFQLLHISSI 142
           V PCL+CAA  + LHI ++
Sbjct: 271 VEPCLMCAAALKQLHIKAV 289


>SPBC12D12.05c |||mitochondrial carrier, calcium binding
           subfamily|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = -3

Query: 230 YAGAISNGIPNXFRRFRESVFKVAPPXXIGYLIYEGVER 114
           Y    + G    ++    ++ KVAP   I YL+YE  ++
Sbjct: 383 YKTTKNEGFRGLYKGLSPNLLKVAPSVAISYLVYENCKK 421


>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = -3

Query: 302 KHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNXFRRFRESVFKVAPPXXIGYLIYEG 123
           +  G++     L TYK+         GA+  G+P+ +   +  V        +G LIY+ 
Sbjct: 20  REHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKV 79

Query: 122 V 120
           V
Sbjct: 80  V 80


>SPBC146.10 |mug57||meiotically upregulated gene
           Mug57|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 127 KELKGSSTDETRKNPADFENEQRHRVCK*KXLNGEM 20
           K + G+     +K    + NE  H +C+ K  NGEM
Sbjct: 140 KTIDGTDVHVIKKEEEIYINESIHVLCRKKASNGEM 175


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 15/61 (24%), Positives = 26/61 (42%)
 Frame = -3

Query: 302 KHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNXFRRFRESVFKVAPPXXIGYLIYEG 123
           +  G++     L TYK+         GA+  G+P+ +   +  V        +G LIY+ 
Sbjct: 20  REHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGKTGVVYNVTQSSVGVLIYKV 79

Query: 122 V 120
           V
Sbjct: 80  V 80


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 296 FGELAKIRGLVTYKISAHEQRAYAGAISNGIPNXF 192
           FG++ ++R  + +K +AH     A  IS G+ N F
Sbjct: 41  FGKVVQLRSFIPFKNAAHALE-NANDISEGVLNDF 74


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 130 MKELKGSSTDETRKNPAD 77
           M+E  GSS+ E RKN +D
Sbjct: 235 MEEFLGSSSSEVRKNDSD 252


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,585,747
Number of Sequences: 5004
Number of extensions: 29271
Number of successful extensions: 76
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)