Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_O07
         (409 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81538-2|CAB04384.1|   90|Caenorhabditis elegans Hypothetical pr...    44   6e-05
U39652-3|AAA80402.1|   90|Caenorhabditis elegans Hypothetical pr...    43   7e-05
AC024761-9|AAP13757.1|  279|Caenorhabditis elegans Hypothetical ...    29   1.3  
U64600-4|AAK39201.1|  299|Caenorhabditis elegans C.elegans homeo...    27   3.9  
AF016657-1|AAB93653.1|  361|Caenorhabditis elegans Hypothetical ...    26   9.1  

>Z81538-2|CAB04384.1|   90|Caenorhabditis elegans Hypothetical
           protein F45H10.2 protein.
          Length = 90

 Score = 43.6 bits (98), Expect = 6e-05
 Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = -3

Query: 311 TMGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNXFRRFRESVFKVAPPXXIG-YL 135
           +MGKHFG L K+ G   + ++ +EQ+AY G         F+ +    +    P  IG YL
Sbjct: 7   SMGKHFGNLGKMYGEHRFALAPNEQKAYKGFFDQAFVKTFKTYVWDQWYYYIPQTIGAYL 66

Query: 134 IYEGVEREQHRRDTEEPC*F 75
           +Y+  ++     + + P  F
Sbjct: 67  LYDWAKKTNVAANRKNPADF 86


>U39652-3|AAA80402.1|   90|Caenorhabditis elegans Hypothetical
           protein R07E4.3 protein.
          Length = 90

 Score = 43.2 bits (97), Expect = 7e-05
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = -3

Query: 308 MGKHFGELAKIRGLVTYKISAHEQRAYAGAISNGIPNXFRRFRESVFKVAPPXXIG-YLI 132
           MGKHFG L K+ G   + ++ +EQ+AY G         F+ +    +    P  IG YL+
Sbjct: 8   MGKHFGNLGKMYGEHRFALAPNEQKAYKGFFDQAFVRTFKTYVWDQWYYYIPQTIGAYLL 67

Query: 131 YEGVEREQHRRDTEEPC*F 75
           Y+  ++     + + P  F
Sbjct: 68  YDWAKKTNVAANRKNPADF 86


>AC024761-9|AAP13757.1|  279|Caenorhabditis elegans Hypothetical
           protein Y38C1AA.12 protein.
          Length = 279

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +3

Query: 9   SFQFISPFNXFHLQTLCLCSFSKSAGF 89
           +F+F+   + FH + + LC+F+K +GF
Sbjct: 244 NFEFVRKNSDFHKKGINLCNFTKKSGF 270


>U64600-4|AAK39201.1|  299|Caenorhabditis elegans C.elegans homeobox
           protein 30 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 3.9
 Identities = 16/34 (47%), Positives = 20/34 (58%)
 Frame = -1

Query: 340 LQNLEVRSSPLWANTLEN*LKFGVLSPTRYLPMN 239
           +QNL +RSSP WAN +   L  G   P   LPM+
Sbjct: 232 VQNL-IRSSPYWANYITA-LPMGTQLPMMGLPMS 263


>AF016657-1|AAB93653.1|  361|Caenorhabditis elegans Hypothetical
           protein C16C4.7 protein.
          Length = 361

 Score = 26.2 bits (55), Expect = 9.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 6   ISFQFISPFNXFHLQTLC-LCSFSKSAGFFRVSSVLLPFNSF 128
           +SFQF + F   HL ++C + +FS+S   F  S + L  + F
Sbjct: 153 VSFQFQNKFFLRHLISICRISTFSRSRIRFSYSRIWLHISIF 194


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,678,325
Number of Sequences: 27780
Number of extensions: 161463
Number of successful extensions: 372
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)