Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_O05
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    36   0.006
SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2 |Sch...    31   0.24 
SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomy...    27   2.2  
SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    27   3.9  
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ...    26   6.8  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    26   6.8  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    25   9.0  
SPBC2G5.04c |||COPII-coated vesicle component Erv41 |Schizosacch...    25   9.0  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 35.9 bits (79), Expect = 0.006
 Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
 Frame = -3

Query: 764 IDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAA 585
           I NP + G W   +I NP+Y  D +      +  VG +LW ++    F +  +      A
Sbjct: 354 IPNPEFIGEWYPRKIPNPDYFDDDHPSHFGPLYGVGFELWTMQPNIRFSNIYVGHSIEDA 413

Query: 584 KERG-EVIKKRQEGEKKM 534
           +  G E    + + E+++
Sbjct: 414 ERLGNETFLPKLKAEREL 431



 Score = 32.7 bits (71), Expect = 0.059
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -3

Query: 764 IDNPAYKGPWVHPEIDNPEY 705
           I NP Y+GPW  P I NPE+
Sbjct: 340 IRNPNYRGPWSPPMIPNPEF 359


>SPBP23A10.04 |apc2||anaphase-promoting complex subunit Apc2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 681

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 336 LHARTLRTPRYSMSWHSLINHNSLQLI 416
           LH  +L T RY+MSW   + H +L+ I
Sbjct: 161 LHVGSLLTTRYAMSWEQSVYHEALEWI 187


>SPAC1F5.09c |shk2|pak2|PAK-related kinase Shk2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 589

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +3

Query: 123 QNIK*LHTSILSVIPIYTDISTKQRTHIYLHTTCPYESVK 242
           +N+K    S L++  I+   + +  TH +L+  CP E +K
Sbjct: 537 KNLKSFLNSCLTIDTIFRATAAELLTHSFLNQACPTEDLK 576


>SPAC1786.02 |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 163 SPSTRTSVQNNGHIFTYTQHVPTNR*NSSQTHAQC 267
           SP   TS  NN   +T TQ++ TN  N +    +C
Sbjct: 293 SPYYLTSFDNNVRSYTPTQYLGTNYSNGTAVDGKC 327


>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 266

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 638 KSGTIF-DDFLITDDPAAAKERGEVIKKRQEG 546
           KS T+F D+  IT  PA+ K+R    KK+  G
Sbjct: 20  KSETVFLDEAAITKPPASKKKRKNRKKKKNNG 51


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 237 PIRRDMLCVSKYVSVVLY*CPCRWGL 160
           P+ +  +C+   +SVV+  CPC  GL
Sbjct: 466 PMGKFAVCLKLTISVVVVACPCALGL 491


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +3

Query: 696 IRSVLWVVDFGMDPWAFVSWVINL 767
           +  +LW  DF ++P +  SW++++
Sbjct: 456 VHRILWRYDFNINPESVESWLLDI 479


>SPBC2G5.04c |||COPII-coated vesicle component Erv41
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 333

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +2

Query: 188 KTTDTYLLTHNMSLRIGKIRAKHTHSAKNK*Q*YWNCRRLRNERF*KKNS 337
           +T D  L T  ++L    I+   T S   K   Y   R  R E+F KKN+
Sbjct: 94  RTKDLVLATEALTLEEAFIKDMPTSSTIYKNDRYAGLRWARTEKFRKKNN 143


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,635,045
Number of Sequences: 5004
Number of extensions: 49965
Number of successful extensions: 151
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)