Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_O05
(769 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0971 + 8169197-8169311,8170351-8170458,8170533-8170725,817... 83 2e-16
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 81 1e-15
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 76 4e-14
01_06_1654 - 38924090-38924101,38924183-38924215,38924737-389248... 75 6e-14
04_03_0812 - 19922208-19922357,19922448-19922564,19922681-199227... 60 2e-09
08_02_1590 + 28074137-28074247,28074791-28074886,28074976-280750... 38 0.009
08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624 30 1.8
04_04_0867 + 28865857-28866657,28866778-28867113,28867248-288674... 29 5.4
03_06_0576 + 34832900-34832911,34833006-34833122,34833752-348338... 28 9.4
>07_01_0971 +
8169197-8169311,8170351-8170458,8170533-8170725,
8170811-8171069,8171151-8171207,8171433-8171480,
8171571-8171657,8171743-8171800,8171891-8171958,
8172066-8172161,8172244-8172291,8172658-8172696,
8172782-8172868,8173136-8173147
Length = 424
Score = 83.4 bits (197), Expect = 2e-16
Identities = 38/77 (49%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Frame = -3
Query: 767 QIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAA 588
+I NP Y+G W P IDNP++ D +Y D + +G++LWQVKSGT+FD+FLITDDP
Sbjct: 290 KIKNPNYQGKWKAPMIDNPDFKDDPYIYAFDSLKYIGIELWQVKSGTLFDNFLITDDPEL 349
Query: 587 AKE-RGEVIKKRQEGEK 540
AK E K ++ EK
Sbjct: 350 AKTFAEETWGKHKDAEK 366
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 81.0 bits (191), Expect = 1e-15
Identities = 37/77 (48%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Frame = -3
Query: 767 QIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAA 588
++ NP YKG W P I NP+Y D +Y D + +G++LWQVKSGT+FD+ LITDDP
Sbjct: 297 KLKNPNYKGKWKAPLIPNPDYKDDPYIYAFDSLNHIGIELWQVKSGTLFDNILITDDPEY 356
Query: 587 AKE-RGEVIKKRQEGEK 540
AK+ E K ++ EK
Sbjct: 357 AKKFAEETWAKHKDAEK 373
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 75.8 bits (178), Expect = 4e-14
Identities = 36/78 (46%), Positives = 50/78 (64%), Gaps = 1/78 (1%)
Frame = -3
Query: 767 QIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAA 588
+I NP YKG W P IDNPE+ D +LY + VG+++WQVK+G++FD+ LI DDP
Sbjct: 288 KIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPLQYVGIEVWQVKAGSVFDNILICDDPEY 347
Query: 587 AKE-RGEVIKKRQEGEKK 537
A+ EV +E EK+
Sbjct: 348 ARSVVDEVRAANKEAEKE 365
>01_06_1654 -
38924090-38924101,38924183-38924215,38924737-38924829,
38924909-38924965,38925048-38925143,38925237-38925304,
38925429-38925486,38925572-38925658,38925935-38925982,
38926060-38926116,38926200-38926458,38926666-38926858,
38926991-38927098,38927849-38927957
Length = 425
Score = 74.9 bits (176), Expect = 6e-14
Identities = 31/66 (46%), Positives = 45/66 (68%)
Frame = -3
Query: 767 QIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAA 588
+I NP YKG W P IDNPE+ D +LY + +G+++WQVK+G++FD+ LI DDP
Sbjct: 288 KIKNPNYKGKWKIPWIDNPEFEDDPDLYVLKPLKYIGIEVWQVKAGSVFDNILICDDPEY 347
Query: 587 AKERGE 570
A++ E
Sbjct: 348 ARKAAE 353
>04_03_0812 -
19922208-19922357,19922448-19922564,19922681-19922752,
19922864-19923993,19924939-19925008,19925125-19925199
Length = 537
Score = 60.1 bits (139), Expect = 2e-09
Identities = 32/83 (38%), Positives = 48/83 (57%), Gaps = 8/83 (9%)
Frame = -3
Query: 764 IDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAAA 585
IDNP YKG W EI NPEY + + D I A+G+++W ++ G +FD+ LI DD A
Sbjct: 331 IDNPNYKGIWKPQEIPNPEYF-ELDKPDSDPIAAIGIEIWTMQDGILFDNILIADDEKVA 389
Query: 584 --------KERGEVIKKRQEGEK 540
K + EV K++++ E+
Sbjct: 390 TSILEKSWKPKYEVEKEKEKAEE 412
>08_02_1590 +
28074137-28074247,28074791-28074886,28074976-28075023,
28075278-28075430
Length = 135
Score = 37.9 bits (84), Expect = 0.009
Identities = 19/36 (52%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Frame = -3
Query: 644 QVKSGTIFDDFLITDDPAAAKE-RGEVIKKRQEGEK 540
+VKSGT+FD+ LITDDP AK+ E K ++ EK
Sbjct: 37 RVKSGTLFDNILITDDPEYAKKFAEETWAKHKDAEK 72
>08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624
Length = 528
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = -3
Query: 272 F*HCACVWLEFYRFVGTCCV*VNMCPLFCTDVRVDGDYA 156
F +CA L YR G+ + N+C +F T + V+G YA
Sbjct: 388 FMYCAIPALFLYRTYGSMSIMWNICLMFITGMFVNGPYA 426
>04_04_0867 +
28865857-28866657,28866778-28867113,28867248-28867451,
28867567-28867746
Length = 506
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +3
Query: 159 VIPIYTDISTKQRTHIYLHTTCPYESVKFEPNTRTVLKTNDNSIG 293
++ +T++S K RT L TC Y N +LKTN + G
Sbjct: 52 LLEYHTELSRKYRTFRMLTPTCNYVYTVEPANVEHILKTNFANYG 96
>03_06_0576 +
34832900-34832911,34833006-34833122,34833752-34833810,
34833901-34833960,34834197-34834250,34834332-34834380,
34834493-34834540,34834889-34834954,34835591-34835641,
34835732-34835851,34835921-34836005,34836428-34836509,
34836666-34836774,34837005-34837051,34837131-34837188,
34839114-34839220,34839700-34839765,34839833-34839879,
34839977-34840042,34840146-34840243,34840344-34840469,
34840551-34840835,34840920-34840985,34841079-34841228
Length = 675
Score = 27.9 bits (59), Expect = 9.4
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +3
Query: 201 HIYLHTTCPYESVKFEPNTRTVL 269
H +H T PY+++ F+P RT+L
Sbjct: 479 HANVHGTLPYDNLHFDPVLRTLL 501
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,496,609
Number of Sequences: 37544
Number of extensions: 328195
Number of successful extensions: 1006
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -