Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_O05
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin pr...    97   1e-20
AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin ...    97   1e-20
Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical pr...    52   5e-07
U88165-5|AAK21392.1|  393|Caenorhabditis elegans Downstream of m...    30   1.6  
U34893-1|AAB01720.1|  393|Caenorhabditis elegans DOM-3 protein.        30   1.6  
AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome r...    29   4.8  
AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical ...    28   6.4  
AB006659-1|BAA21847.1|  655|Caenorhabditis elegans E6-AP ubiquit...    28   6.4  
AL132898-8|CAB60959.1|  297|Caenorhabditis elegans Hypothetical ...    28   8.4  

>X59589-1|CAA42159.1|  395|Caenorhabditis elegans calreticulin
           protein.
          Length = 395

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/78 (56%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
 Frame = -3

Query: 767 QIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAA 588
           QI NPAYKG W+HPEI+NPEYTPD  LY  +   A+G DLWQVKSGTIFD+ +ITD    
Sbjct: 274 QIKNPAYKGKWIHPEIENPEYTPDDELYSYESWGAIGFDLWQVKSGTIFDNIIITDSVEE 333

Query: 587 AK-ERGEVIKKRQEGEKK 537
           A+    E   K +  EK+
Sbjct: 334 AEAHAAETFDKLKTVEKE 351


>AF125963-7|AAD14746.1|  395|Caenorhabditis elegans Calreticulin
           protein 1 protein.
          Length = 395

 Score = 97.1 bits (231), Expect = 1e-20
 Identities = 44/78 (56%), Positives = 53/78 (67%), Gaps = 1/78 (1%)
 Frame = -3

Query: 767 QIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLITDDPAA 588
           QI NPAYKG W+HPEI+NPEYTPD  LY  +   A+G DLWQVKSGTIFD+ +ITD    
Sbjct: 274 QIKNPAYKGKWIHPEIENPEYTPDDELYSYESWGAIGFDLWQVKSGTIFDNIIITDSVEE 333

Query: 587 AK-ERGEVIKKRQEGEKK 537
           A+    E   K +  EK+
Sbjct: 334 AEAHAAETFDKLKTVEKE 351


>Z22181-5|CAA80183.1|  619|Caenorhabditis elegans Hypothetical
           protein ZK632.6 protein.
          Length = 619

 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
 Frame = -3

Query: 767 QIDNPAYKGPWVHPEIDNPEYTPDSNLYKRDEICAVGLDLWQVKSGTIFDDFLIT---DD 597
           +I NPA+KG W    IDNP Y           I AVG+++W +    +FD+ LIT   +D
Sbjct: 379 KISNPAFKGKWTARLIDNPNYFEPKPFAGLAPITAVGIEMWTMSENILFDNILITSSEED 438

Query: 596 PAAAKERGEVIKKRQE 549
            +   ++   +K+++E
Sbjct: 439 SSDVAKQTFYVKQKEE 454


>U88165-5|AAK21392.1|  393|Caenorhabditis elegans Downstream of mes
           (in same operon)protein 3 protein.
          Length = 393

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +2

Query: 92  HVPAHGASPITKH*IITYIN---SERNPHLHGHQYKTTDTYLLTHNMSLRIGKIRAKHTH 262
           H+P     P+     I + N     RNP     Q K    Y + ++  L++G++RAK  H
Sbjct: 28  HIPKITGQPLPNEVQIPFDNMIYETRNPPKFEKQAKFISEYCINYDRKLQLGRMRAKKFH 87


>U34893-1|AAB01720.1|  393|Caenorhabditis elegans DOM-3 protein.
          Length = 393

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +2

Query: 92  HVPAHGASPITKH*IITYIN---SERNPHLHGHQYKTTDTYLLTHNMSLRIGKIRAKHTH 262
           H+P     P+     I + N     RNP     Q K    Y + ++  L++G++RAK  H
Sbjct: 28  HIPKITGQPLPNEVQIPFDNMIYETRNPPKFEKQAKFISEYCINYDRKLQLGRMRAKKFH 87


>AF067219-13|AAC17024.1|  362|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 8 protein.
          Length = 362

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = -3

Query: 728 PEIDNPEYTPDSNLYKRDEICAV---GLDLWQVKSGTIFDDFLITDDPAAAKERGEVIKK 558
           P++ +P+Y    N+   D++  V    L    V    + D+ +        +E GE  KK
Sbjct: 271 PDVTHPDYIVSQNVQTNDQLMCVYMGSLVRSVVALHNLIDNKISLQKAEKEQETGEAEKK 330

Query: 557 RQEGEKK 537
           + E +KK
Sbjct: 331 KDEKDKK 337


>AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical
            protein Y39A1C.2 protein.
          Length = 1066

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +3

Query: 234  SVKFEPNTRTVLKTNDNSIGIVEDCA-MRGFKRRILHARTLRTPRYSM---SWHSLINHN 401
            +V   P+ RT+  TN+N I  V   A  R F+R     +   T   S+   +W SL   N
Sbjct: 857  TVDLVPSGRTISVTNENKIDYVHRMAHHRVFRRTQEQCKAFVTGMQSILQPTWLSLFAPN 916

Query: 402  SLQLIV 419
             LQ ++
Sbjct: 917  DLQCLI 922


>AB006659-1|BAA21847.1|  655|Caenorhabditis elegans E6-AP
           ubiquitin-protein ligase protein.
          Length = 655

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
 Frame = +3

Query: 234 SVKFEPNTRTVLKTNDNSIGIVEDCA-MRGFKRRILHARTLRTPRYSM---SWHSLINHN 401
           +V   P+ RT+  TN+N I  V   A  R F+R     +   T   S+   +W SL   N
Sbjct: 445 TVDLVPSGRTISVTNENKIDYVHRMAHHRVFRRTQEQCKAFVTGMQSILQPTWLSLFAPN 504

Query: 402 SLQLIV 419
            LQ ++
Sbjct: 505 DLQCLI 510


>AL132898-8|CAB60959.1|  297|Caenorhabditis elegans Hypothetical
           protein Y59A8B.11 protein.
          Length = 297

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/46 (36%), Positives = 20/46 (43%)
 Frame = -1

Query: 376 DIEYLGVRSVRAWRILLLKPLIAQSSTIPILLSFVFSTVRVFGSNF 239
           D  YL V      R +LLK  + +S  I     F    VRVF  NF
Sbjct: 221 DTAYLSVADAVKIRDILLKSTVFESGIITSRNIFSVGVVRVFNPNF 266


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,875,005
Number of Sequences: 27780
Number of extensions: 292788
Number of successful extensions: 863
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 863
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)