Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_O04
         (388 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003140-9|AAB54171.1|   86|Caenorhabditis elegans Acyl-coenzyme...    77   6e-15
Z68004-6|CAA91987.2|  116|Caenorhabditis elegans Hypothetical pr...    72   1e-13
Z46794-8|CAA86779.1|  385|Caenorhabditis elegans Hypothetical pr...    59   1e-09
AL023828-1|CAA19448.1|  115|Caenorhabditis elegans Hypothetical ...    58   3e-09
U00063-1|AAK18960.1|  146|Caenorhabditis elegans Acyl-coenzyme a...    57   4e-09
Z92826-2|CAB07319.1|  266|Caenorhabditis elegans Hypothetical pr...    50   4e-07
U27312-8|AAZ32809.1|  219|Caenorhabditis elegans Hypothetical pr...    40   5e-04
U28942-1|AAA68355.2|  441|Caenorhabditis elegans Hypothetical pr...    30   0.65 
U41274-5|AAA82461.2|  571|Caenorhabditis elegans Nematode astaci...    29   1.1  
AC024214-14|AAU87808.1|  644|Caenorhabditis elegans Hypothetical...    28   2.6  
AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical...    28   2.6  
Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical pr...    27   4.6  
AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed ...    27   4.6  
Z81529-5|CAB04296.1|  288|Caenorhabditis elegans Hypothetical pr...    27   6.1  
AF040661-9|AAG24214.1|  345|Caenorhabditis elegans Hypothetical ...    27   6.1  
U97593-1|AAB52875.1|  715|Caenorhabditis elegans Hypothetical pr...    26   8.1  
U41992-6|AAA83357.1|  270|Caenorhabditis elegans Hypothetical pr...    26   8.1  

>AF003140-9|AAB54171.1|   86|Caenorhabditis elegans Acyl-coenzyme a
           binding proteinprotein 1 protein.
          Length = 86

 Score = 76.6 bits (180), Expect = 6e-15
 Identities = 36/80 (45%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
 Frame = -1

Query: 298 FKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPS--GLVESAKWKAWNSRKGI 125
           F   A  V+  KT PS+DE L LY+L+KQ T+GD    +P    L   AKW AW+ +KG+
Sbjct: 5   FDDAAATVKTLKTSPSNDELLKLYALFKQGTVGDNTTDKPGMFDLKGKAKWSAWDEKKGL 64

Query: 124 SQDDAKKQYIENAEKLHSKY 65
           ++DDA+K Y+   E+L +KY
Sbjct: 65  AKDDAQKAYVALVEELIAKY 84


>Z68004-6|CAA91987.2|  116|Caenorhabditis elegans Hypothetical
           protein F47B10.7 protein.
          Length = 116

 Score = 72.1 bits (169), Expect = 1e-13
 Identities = 37/91 (40%), Positives = 56/91 (61%), Gaps = 6/91 (6%)
 Frame = -1

Query: 316 MSLDEQFKQVADKVRNW-KTKP---SDDENLALYSLYKQATIGDVNIAQPS--GLVESAK 155
           MSL E+F    + ++   KT P   S+D+ L  YSL+KQA+IGDVN  +P    ++E  K
Sbjct: 1   MSLQEKFDAAVEIIQKLPKTGPVATSNDQKLTFYSLFKQASIGDVNTDRPGIFSIIERKK 60

Query: 154 WKAWNSRKGISQDDAKKQYIENAEKLHSKYA 62
           W +W   +G+SQD+AK++YI+    +  K A
Sbjct: 61  WDSWKELEGVSQDEAKERYIKALNDMFDKIA 91


>Z46794-8|CAA86779.1|  385|Caenorhabditis elegans Hypothetical
           protein R06F6.9 protein.
          Length = 385

 Score = 58.8 bits (136), Expect = 1e-09
 Identities = 32/86 (37%), Positives = 47/86 (54%), Gaps = 2/86 (2%)
 Frame = -1

Query: 313 SLDEQFKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVNIAQPS--GLVESAKWKAWN 140
           S    F++    ++  K +P +D  L LY L+KQAT GDV   +P     V  AK+ AWN
Sbjct: 24  SAQADFEKAQKNLKTLKEEPDNDVKLQLYGLFKQATAGDVQGKRPGMMDFVGRAKYDAWN 83

Query: 139 SRKGISQDDAKKQYIENAEKLHSKYA 62
           + KG +QD+A+  Y +    L S+ A
Sbjct: 84  TLKGQTQDEARANYAKLVGGLISEEA 109


>AL023828-1|CAA19448.1|  115|Caenorhabditis elegans Hypothetical
           protein Y17G7B.1 protein.
          Length = 115

 Score = 57.6 bits (133), Expect = 3e-09
 Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 5/83 (6%)
 Frame = -1

Query: 298 FKQVADKVRNWKTKPSDDENLALYSLYKQATIGDVN----IAQPSG-LVESAKWKAWNSR 134
           F+  A+++R  K++P+D E L LY+LYKQA  GD+        P+G  V   K+ AW S+
Sbjct: 15  FEIAAEEMRRLKSEPTDRERLKLYALYKQALHGDIPNEDVYPVPAGDEVGRKKYAAWKSQ 74

Query: 133 KGISQDDAKKQYIENAEKLHSKY 65
           KG + +  +  Y+  AE++  KY
Sbjct: 75  KGANSEKCRADYVAIAEEMIKKY 97


>U00063-1|AAK18960.1|  146|Caenorhabditis elegans Acyl-coenzyme a
           binding proteinprotein 4 protein.
          Length = 146

 Score = 57.2 bits (132), Expect = 4e-09
 Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 6/85 (7%)
 Frame = -1

Query: 313 SLDEQFKQVADKV----RNWKTKPSDDENLALYSLYKQATIGDVNIAQP--SGLVESAKW 152
           SLDEQF+     +    +N   K S ++ L +YSLYKQAT G  +  QP    + +  KW
Sbjct: 4   SLDEQFEAAVWIINALPKNGPIKTSINDQLQMYSLYKQATSGKCDTIQPYFFQIEQRMKW 63

Query: 151 KAWNSRKGISQDDAKKQYIENAEKL 77
            AWN    + + +AK QY+E   KL
Sbjct: 64  NAWNQLGNMDEAEAKAQYVEKMLKL 88


>Z92826-2|CAB07319.1|  266|Caenorhabditis elegans Hypothetical
           protein C18D11.2 protein.
          Length = 266

 Score = 50.4 bits (115), Expect = 4e-07
 Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
 Frame = -1

Query: 259 KPSDDENLALYSLYKQATIGDVNIAQPS--GLVESAKWKAWNSRKGISQDDAKKQYIEN 89
           K S DE L  Y+L+KQAT G  ++ +PS   +    KW AWN    ++ D+AK+ Y+++
Sbjct: 21  KTSTDEKLNFYALFKQATHGKCDLPKPSFYDIQGVYKWNAWNKLDNMTMDEAKQAYVDS 79


>U27312-8|AAZ32809.1|  219|Caenorhabditis elegans Hypothetical
           protein F26A1.15 protein.
          Length = 219

 Score = 40.3 bits (90), Expect = 5e-04
 Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 14/66 (21%)
 Frame = -1

Query: 232 LYSLYKQATIGDVNIAQPSGLV--------------ESAKWKAWNSRKGISQDDAKKQYI 95
           ++ LY+QA +GDVN+ + + +                + KW AWN  +G+++++A +QY+
Sbjct: 123 VWGLYQQAIVGDVNVPKLNYMEIDEGEKSWMWRWINGNEKWHAWNKCRGLTKEEASEQYV 182

Query: 94  ENAEKL 77
           E  +KL
Sbjct: 183 EAVQKL 188


>U28942-1|AAA68355.2|  441|Caenorhabditis elegans Hypothetical
           protein F56D3.1 protein.
          Length = 441

 Score = 29.9 bits (64), Expect = 0.65
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -2

Query: 297 SNRSPIRLGTGRPSPVTMRTLRCTPCTSRLP*VMLTLPSPAVLWRAP 157
           + ++P  + T RP P T  T+R  P     P    TLP    + RAP
Sbjct: 110 TTQAPTTIRTTRPPPAT--TIRTIPFVQTTPATFATLPPAPAVTRAP 154


>U41274-5|AAA82461.2|  571|Caenorhabditis elegans Nematode astacin
           protease protein15 protein.
          Length = 571

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 22/65 (33%), Positives = 31/65 (47%)
 Frame = -2

Query: 264 RPSPVTMRTLRCTPCTSRLP*VMLTLPSPAVLWRAPSGRHGTVAKASPKTMPRSNTSKMR 85
           +P P  +   R T  T+R    ++TLP   +  R+P+    T  KA+P T   S TS   
Sbjct: 473 KPPPTEIPDNRPTVVTTR---PLVTLPPAVIRSRSPAPPVSTTTKAAPTT---STTSAAP 526

Query: 84  RSSTP 70
            S TP
Sbjct: 527 YSPTP 531


>AC024214-14|AAU87808.1|  644|Caenorhabditis elegans Hypothetical
           protein Y77E11A.12b protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = +2

Query: 131 FATVPCLPLGALHKTAGLGNVNITYGSLLVQGVQRKVLIVTGLGLPVPNL 280
           + +VP L LG    + G  N N     LL QG    +L   GLG   PNL
Sbjct: 7   YLSVPMLNLGQRRSSEGYLNAN----DLLSQGGGESLLDSAGLGTSQPNL 52


>AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical
           protein Y71H2B.1 protein.
          Length = 143

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -1

Query: 232 LYSLYKQATIGDVNIAQPSGLVESAKWKAWNSRKGISQDDAKKQYIENAEKLHSKY 65
           L +LY QAT+GD +     G       + W    G +Q +A ++YI+   +  +KY
Sbjct: 84  LNALYMQATVGDYD-----GNTALKCGQYWKKHSGKTQIEAIREYIKLTNQTLTKY 134


>Z78419-3|CAB01701.2| 1632|Caenorhabditis elegans Hypothetical
           protein F26A3.3 protein.
          Length = 1632

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = -1

Query: 283 DKVRNWK-----TKPSDDENLALYSLYKQATIGDVNIAQPSGLVESAKWKA 146
           D +R W      +KPSDD + +L  +++ + I  ++   P   VE  K+ +
Sbjct: 719 DNLRQWSISYNISKPSDDSSWSLNCMFRPSQIKFISKRHPRDQVEIVKYSS 769


>AF159143-1|AAF80367.1| 1632|Caenorhabditis elegans RNA-directed RNA
           polymerase relatedEGO-1 protein.
          Length = 1632

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = -1

Query: 283 DKVRNWK-----TKPSDDENLALYSLYKQATIGDVNIAQPSGLVESAKWKA 146
           D +R W      +KPSDD + +L  +++ + I  ++   P   VE  K+ +
Sbjct: 719 DNLRQWSISYNISKPSDDSSWSLNCMFRPSQIKFISKRHPRDQVEIVKYSS 769


>Z81529-5|CAB04296.1|  288|Caenorhabditis elegans Hypothetical
           protein F35E8.7 protein.
          Length = 288

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
 Frame = -2

Query: 300 NSN-RSPIRLGTGRPSPVTMRTLRCTPCTSRLP*VMLTLPSPAVLWRAPSGRHGTVAKAS 124
           N+N R   +  T  P+  T       P T+  P V+ T  +PA +    +    TVA A+
Sbjct: 180 NANCRKTCKRCTSGPTATTSTAAPAAPTTTVAPAVVTTTAAPAAVTTTAAVTTTTVAAAA 239

Query: 123 PKTMPRSNTS 94
             T   + TS
Sbjct: 240 ATTTAAACTS 249


>AF040661-9|AAG24214.1|  345|Caenorhabditis elegans Hypothetical
           protein W10G11.5 protein.
          Length = 345

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 1/80 (1%)
 Frame = -2

Query: 342 LLISKDNTKCLSTSNSNRSPIRL-GTGRPSPVTMRTLRCTPCTSRLP*VMLTLPSPAVLW 166
           +L +   T   +T  +   P  +  T  P+ VT  ++  T  +++LP  + T P P    
Sbjct: 91  ILTTVTTTSTTTTVTTTPIPTTVTSTHIPTTVTTTSIPTTVPSTQLPTTVTTTPIPTTTT 150

Query: 165 RAPSGRHGTVAKASPKTMPR 106
           R  +       K  P T PR
Sbjct: 151 RKTTTTTLRPTKPRPMTKPR 170


>U97593-1|AAB52875.1|  715|Caenorhabditis elegans Hypothetical
           protein C46G7.3 protein.
          Length = 715

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -2

Query: 303 SNSNRSPIRLGTGRPSPVTMRTLRCTPCTSR 211
           +N NR  +  G    S +   TL+CT C+ R
Sbjct: 645 ANDNRCAVCAGERHSSSMCYSTLKCTYCSGR 675


>U41992-6|AAA83357.1|  270|Caenorhabditis elegans Hypothetical
           protein F32E10.2 protein.
          Length = 270

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 8/21 (38%), Positives = 16/21 (76%)
 Frame = -2

Query: 123 PKTMPRSNTSKMRRSSTPNTH 61
           PK  P+ +T K++R+++P T+
Sbjct: 184 PKKTPKQSTKKLKRTTSPETN 204


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,829,547
Number of Sequences: 27780
Number of extensions: 215625
Number of successful extensions: 744
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)