Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_O02
         (671 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity f...    27   3.3  
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    26   5.7  

>SPAC22H10.05c |||mRNA cleavage and polyadenylation specificity
           factor complex subunit |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 43  LVLKAFYHSTKVGLEGFIYISLMCVLQAYGPPGVKWLPE 159
           L L   YH T+V  +G IY    C L+  G P V+++ E
Sbjct: 37  LALGPPYHFTRV--KGAIYTWQGCTLEVEGEPSVEYVAE 73


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 56  HSIIQPRLAWRALFIYRLCACYKL 127
           HSI  PRL + + FIY  C   +L
Sbjct: 173 HSISYPRLLYSSAFIYVACLLLRL 196


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,210,296
Number of Sequences: 5004
Number of extensions: 38773
Number of successful extensions: 77
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)