Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_O02
         (671 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           22   4.6  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   6.1  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.1  

>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 358 STGVFALIFQYIPAKTSDRVVHWTVIAVNGECTE*TLYKVVSLF 227
           S+GV     +YI    +DRV+   +  V   C + T   VVSL+
Sbjct: 58  SSGVTLAGNRYIYLSGTDRVIRAKLGKVGVHCMKTTQAVVVSLY 101


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 236 IAIYCRRKLLFNEFIVA 186
           +A+YCR +L  N FI A
Sbjct: 112 VAVYCRDRLNPNLFIYA 128


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 103 SLMCVLQAYGPPGVKWLPES 162
           SL+CV QA   P  +W  ++
Sbjct: 256 SLVCVAQACPTPEYRWYAQT 275


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 103 SLMCVLQAYGPPGVKWLPES 162
           SL+CV QA   P  +W  ++
Sbjct: 256 SLVCVAQACPTPEYRWYAQT 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,429
Number of Sequences: 438
Number of extensions: 2758
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20343105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)