Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_N23
(335 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces p... 39 2e-04
SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces... 31 0.062
SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory... 25 2.3
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1... 25 3.1
SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 3.1
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 25 3.1
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 25 4.1
SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces pom... 25 4.1
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 24 5.4
SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces... 24 7.1
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 24 7.1
SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyce... 23 9.4
SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyce... 23 9.4
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 23 9.4
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 23 9.4
>SPAC3G6.02 |dss1||mRNA export protein Dss1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 71
Score = 38.7 bits (86), Expect = 2e-04
Identities = 18/42 (42%), Positives = 27/42 (64%), Gaps = 3/42 (7%)
Frame = -2
Query: 163 ENWGTEDA--DDEDVSVWEDNWED-DVIQDDFNQQLRQQSGK 47
ENW +D D D ++WE+NW+D D+ DDF+ QL+ + K
Sbjct: 24 ENWPMKDTELDTGDDTLWENNWDDEDIGDDDFSVQLQAELKK 65
>SPBC1105.14 |rsv2||transcription factor Rsv2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 637
Score = 30.7 bits (66), Expect = 0.062
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 169 PAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQ 56
P EN + D +DVS+ DN DV QD FN++ +Q
Sbjct: 378 PQEN-SAQIYDGKDVSMVNDNMHSDVRQDSFNKESIKQ 414
>SPCC550.13 |dfp1|rad35, him1|Hsk1-Dfp1 kinase complex regulatory
subunit Dfp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 545
Score = 25.4 bits (53), Expect = 2.3
Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 151 TEDADDEDVSVWEDNWEDD-VIQDDF 77
T +A E++ W+DN ED+ ++ DF
Sbjct: 35 TNEAQREEIITWKDNREDEGEVKTDF 60
>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
Epe1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 948
Score = 25.0 bits (52), Expect = 3.1
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +1
Query: 124 IHLHHQRLLYPNFPQEILR 180
+H +HQRLL +FPQ+ R
Sbjct: 134 LHKNHQRLLGMSFPQDGFR 152
>SPAC29B12.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 682
Score = 25.0 bits (52), Expect = 3.1
Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 11/58 (18%)
Frame = +1
Query: 94 RRLPSCLPKPIHLH-----HQRLLYPN-----FPQEILRTRHPLL-ANQGLLSVCQPL 234
+ +P LP PIH H H + YPN FPQ I LL A+ L V PL
Sbjct: 588 QNVPQQLPPPIHSHLSDDQHIQYSYPNTFVNRFPQNIHHPSANLLDASAALNPVQNPL 645
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 25.0 bits (52), Expect = 3.1
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 163 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQSGK 47
E E +DDE +S ++ ED+ I ++ N + R+ S K
Sbjct: 279 EEEAEETSDDEPLSSEDEENEDEDITEESNLRKRKVSDK 317
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 24.6 bits (51), Expect = 4.1
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 94 RRLPSCLPKPIHLHHQRLLYPN 159
R+ L + IH HH+RLL+PN
Sbjct: 64 RKQAIILAREIH-HHRRLLHPN 84
>SPBC947.05c |||ferric-chelate reductase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 564
Score = 24.6 bits (51), Expect = 4.1
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +2
Query: 80 IILDDVVFPVVFPNRYIFIISVFCTPIFRRKFFELVILF*QT---KVYFLFVSHYTVMII 250
++ D + F +F+++V P RRKFFE + T + FL H+ I+
Sbjct: 179 LLYDKISIYGYFITVVLFLMTVASLPSVRRKFFEWFFVLHHTCSVLIIFLIWLHHPRTIV 238
Query: 251 EIR 259
++
Sbjct: 239 YMK 241
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 24.2 bits (50), Expect = 5.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +1
Query: 115 PKPIHLHHQRLLYPNFPQEI 174
P P + H R++ PN P+EI
Sbjct: 23 PPPKEVLHTRVIVPNGPEEI 42
>SPBC36B7.08c |||nucleosome assembly protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 244
Score = 23.8 bits (49), Expect = 7.1
Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Frame = -2
Query: 151 TEDADDEDVSV-WEDNWEDDVIQDDFNQQLRQQ 56
TE+A DED SV E++ E++ +D+ + +Q+
Sbjct: 202 TEEASDEDESVDLEEDEEEEDEEDEEGDEEKQE 234
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 23.8 bits (49), Expect = 7.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 124 IHLHHQRLLYPNFPQEILRTRHP 192
+ +HHQ + QE L TR+P
Sbjct: 193 LSIHHQHIQAHEMAQESLETRNP 215
>SPBC19C7.12c |||alpha-1,2-mannosyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 23.4 bits (48), Expect = 9.4
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +2
Query: 38 PSXFSRLLPQLLIKIILDDVVFPVVFPNRYIFIISVF 148
P F R+L L+ ++L VVF V F +YI ISVF
Sbjct: 5 PRKFKRVL---LLVVLLTLVVF-VRFKKQYIPTISVF 37
>SPAC1486.02c |ucp14||UBA domain protein Ucp14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 23.4 bits (48), Expect = 9.4
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +2
Query: 125 YIFIISVFCTPIF 163
Y+FI+ +F TPIF
Sbjct: 95 YMFILGMFVTPIF 107
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 23.4 bits (48), Expect = 9.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 148 LYPNFPQEILRTRHPLL 198
LYPNFP ++ + P L
Sbjct: 79 LYPNFPAQLKENKKPKL 95
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 23.4 bits (48), Expect = 9.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = -2
Query: 112 DNWEDDVIQDDFNQQLRQQSGK 47
D W +I DD N LR+++ K
Sbjct: 1454 DAWAFQLIMDDINHLLRKENPK 1475
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,207,292
Number of Sequences: 5004
Number of extensions: 21802
Number of successful extensions: 72
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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