Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_N23
(335 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1186 - 9440805-9440938,9442890-9442986 46 1e-05
01_03_0048 + 11953517-11953681,11954603-11954669,11954894-11955024 45 2e-05
11_01_0219 - 1710206-1710246,1710479-1710620,1710699-1710752,171... 31 0.18
02_01_0625 + 4690607-4690696,4692673-4692734,4692867-4693230 30 0.53
07_03_1325 + 25830838-25831440 29 0.93
02_05_0685 + 30891289-30891810,30892740-30892915,30893379-308934... 29 0.93
03_01_0184 - 1479520-1479649,1479889-1479938,1480519-1480683,148... 28 1.6
01_03_0284 - 14595643-14595663,14595978-14596018,14596379-145967... 28 1.6
04_04_1689 + 35379627-35379746,35379823-35380344,35380428-353805... 27 2.9
03_01_0251 - 1956985-1957058,1957238-1957361,1957646-1957744,195... 27 2.9
09_06_0241 + 21803476-21803604,21804968-21805026,21805117-21805444 27 5.0
12_01_0243 + 1816725-1816883,1816992-1817114,1817227-1817313,181... 26 6.6
05_07_0193 - 28319783-28320211,28320798-28320925,28321543-283218... 26 6.6
01_06_0986 - 33602714-33602741,33603037-33603146,33603401-336036... 26 6.6
04_04_1420 + 33441260-33443704 26 8.7
>01_01_1186 - 9440805-9440938,9442890-9442986
Length = 76
Score = 45.6 bits (103), Expect = 1e-05
Identities = 15/36 (41%), Positives = 25/36 (69%)
Frame = -2
Query: 163 ENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQ 56
+ W ++ DE + WED+W+DD + DDF+ QLR++
Sbjct: 32 QEWDDKEDGDEAIQQWEDDWDDDDVNDDFSLQLRKE 67
>01_03_0048 + 11953517-11953681,11954603-11954669,11954894-11955024
Length = 120
Score = 44.8 bits (101), Expect = 2e-05
Identities = 15/37 (40%), Positives = 26/37 (70%)
Frame = -2
Query: 166 AENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQ 56
++ W ++ +E V WED+W+DD + DDF+ QLR++
Sbjct: 76 SDEWDDKEEGNEAVQQWEDDWDDDDVNDDFSLQLRKE 112
>11_01_0219 -
1710206-1710246,1710479-1710620,1710699-1710752,
1710838-1710909,1711631-1711699,1711807-1711848,
1711946-1712014,1712130-1712267,1712390-1712500,
1712576-1712726,1713720-1713775,1714076-1714753
Length = 540
Score = 31.5 bits (68), Expect = 0.18
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -2
Query: 163 ENWGTEDADDEDVSVWEDNWEDD---VIQDDFNQQLRQQSGKX*RIRNLNFS 17
ENW ED+D ED +++ EDD + +DF+ + ++ G I +FS
Sbjct: 199 ENWMEEDSDSEDEEYLDEDEEDDDEHLDLEDFDDEEEEEEGAVGDIMKDDFS 250
>02_01_0625 + 4690607-4690696,4692673-4692734,4692867-4693230
Length = 171
Score = 29.9 bits (64), Expect = 0.53
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 166 AENWGTEDADDEDVSVWEDNWEDD 95
AEN G +DA DED S E N ED+
Sbjct: 83 AENQGDDDAGDEDASEEEGNDEDE 106
>07_03_1325 + 25830838-25831440
Length = 200
Score = 29.1 bits (62), Expect = 0.93
Identities = 9/22 (40%), Positives = 18/22 (81%)
Frame = -2
Query: 148 EDADDEDVSVWEDNWEDDVIQD 83
+DAD+ED+ W++++ D++ QD
Sbjct: 114 DDADEEDLKEWDEDFVDELDQD 135
>02_05_0685 +
30891289-30891810,30892740-30892915,30893379-30893492,
30893846-30893954,30894038-30894124,30895137-30895736,
30895823-30896101,30896808-30896897,30897151-30897507,
30897924-30898160,30898733-30898953,30899856-30899955,
30900042-30900188,30900287-30900385
Length = 1045
Score = 29.1 bits (62), Expect = 0.93
Identities = 11/40 (27%), Positives = 24/40 (60%)
Frame = -2
Query: 169 PAENWGTEDADDEDVSVWEDNWEDDVIQDDFNQQLRQQSG 50
P + ++ DDE++ + +D D+ DD +++L ++SG
Sbjct: 62 PVSDDDEDEEDDEEIDIRDDADVDEEYDDDDDEELDEESG 101
>03_01_0184 -
1479520-1479649,1479889-1479938,1480519-1480683,
1481287-1481339,1481805-1481934,1482189-1482266,
1482583-1482642,1483428-1483480,1483574-1483895
Length = 346
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = +1
Query: 115 PKPIHLHHQRLLYPNFPQEILRTRHPLLANQGLLSVCQPLYC 240
P+ +H H +R P Q TR LL +G S +PLYC
Sbjct: 11 PRLLHRHRRREAKP---QRRSATRVSLLPRRGAASARRPLYC 49
>01_03_0284 -
14595643-14595663,14595978-14596018,14596379-14596732,
14597023-14597494,14597524-14600001
Length = 1121
Score = 28.3 bits (60), Expect = 1.6
Identities = 17/47 (36%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Frame = +1
Query: 112 LPKPIHLHHQRLLYPNFPQEILRTRHPLLANQGL----LSVCQPLYC 240
L +P HLHH R L + Q ++R + L LS C PL C
Sbjct: 590 LIQPKHLHHLRYLNLTYSQNMVRLPEEISILYNLQTLDLSACWPLRC 636
>04_04_1689 +
35379627-35379746,35379823-35380344,35380428-35380526,
35380608-35380979
Length = 370
Score = 27.5 bits (58), Expect = 2.9
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 157 WGTEDADDEDVSVWEDNWEDD 95
WGT+D DD+ E++ EDD
Sbjct: 328 WGTDDDDDDQQPAEEEDEEDD 348
>03_01_0251 -
1956985-1957058,1957238-1957361,1957646-1957744,
1957821-1957919,1958097-1958195,1958306-1958404,
1958744-1958820,1959232-1959952
Length = 463
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 112 LPKPIHLHHQRLLYPNFPQEILRTRHPLLANQGL 213
+P + LHH LL+P FP + +T +PL A+ L
Sbjct: 1 MPPSLSLHHHLLLFP-FPSHV-QTLNPLSASPRL 32
>09_06_0241 + 21803476-21803604,21804968-21805026,21805117-21805444
Length = 171
Score = 26.6 bits (56), Expect = 5.0
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -2
Query: 154 GTEDADDEDVSVWEDNWEDDVIQDDFNQQ 68
G++D DD+D +++ EDD +DD +++
Sbjct: 129 GSDDEDDDDDDGGDEDGEDDDDEDDDDEE 157
>12_01_0243 +
1816725-1816883,1816992-1817114,1817227-1817313,
1817442-1817546,1817744-1817905,1818473-1818508,
1818637-1818708,1819285-1819562,1820275-1820509
Length = 418
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -2
Query: 148 EDADDEDVSVWEDNWEDDVIQDDFNQQL 65
EDA++E W+D W+DD + N++L
Sbjct: 388 EDAEEEKARAWDD-WKDDNPRGAGNKKL 414
>05_07_0193 -
28319783-28320211,28320798-28320925,28321543-28321888,
28322386-28322454
Length = 323
Score = 26.2 bits (55), Expect = 6.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 169 PAENWGTEDADDEDVSVWEDNWEDD 95
P G ++AD D W+DNW D+
Sbjct: 268 PLSTGGKKEADQSDQ--WDDNWGDE 290
>01_06_0986 -
33602714-33602741,33603037-33603146,33603401-33603601,
33604605-33604697,33604937-33605182,33606007-33606372,
33606459-33606599,33607170-33607526
Length = 513
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = -2
Query: 154 GTEDADDEDVSV---WEDNWEDDVIQDDFNQQL 65
G E+ ED+ WE+ W+ +V +DD N Q+
Sbjct: 283 GHENEQGEDIIAILPWEEWWDFEVKKDDSNPQI 315
>04_04_1420 + 33441260-33443704
Length = 814
Score = 25.8 bits (54), Expect = 8.7
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 145 DADDEDVSVWEDNWEDDVIQDDFN 74
D D+E+VS W + D ++ DFN
Sbjct: 752 DDDEEEVSTWLEELVDARLRGDFN 775
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,570,083
Number of Sequences: 37544
Number of extensions: 137511
Number of successful extensions: 460
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 451
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 471517020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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