Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_N14
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces...    44   1e-05
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    25   8.3  

>SPBC13E7.04 |atp16||F1-ATPase delta subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 160

 Score = 44.4 bits (100), Expect = 1e-05
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
 Frame = -2

Query: 438 VRNYADA-PKGDEMALTFAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTPGC 277
           +R YA A  K +++ L+ A   +  Y+K  V Q+D+P+  G  GIL  HVP   C
Sbjct: 18  IRGYAQAVQKNEKLVLSMALPYQTIYEKVPVTQVDIPAEDGEMGILKDHVPMIQC 72



 Score = 38.7 bits (86), Expect = 6e-04
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 1/65 (1%)
 Frame = -3

Query: 302 LNTYLPLA-VLRPGVVTILENDGKQNKIFVSSGTITVNDDSSVQVLAEEAHPLESIDRSA 126
           L  ++P+   L+PGV+++ +    ++K F+S G       + + +   EA+ LE    S 
Sbjct: 63  LKDHVPMIQCLKPGVISVTDESSNKSKYFISGGFAVQQPSNELSITVPEAYKLEDFSSSV 122

Query: 125 AQEAL 111
           A + L
Sbjct: 123 ANQLL 127


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 428 MQMLPKVTKWH*PSLRVIRSFMTNKLSNK 342
           +Q  P + +W   +LR +  F+TNKL NK
Sbjct: 336 LQPCPSLAEWD--ALRKVWLFITNKLLNK 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,081,113
Number of Sequences: 5004
Number of extensions: 40643
Number of successful extensions: 84
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)