Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_N14
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0467 - 18479199-18479543,18481145-18481417                       44   9e-05
04_03_0558 + 17111138-17111996,17112474-17112564,17112647-171132...    27   8.5  

>07_03_0467 - 18479199-18479543,18481145-18481417
          Length = 205

 Score = 44.0 bits (99), Expect = 9e-05
 Identities = 24/59 (40%), Positives = 38/59 (64%)
 Frame = -3

Query: 284 LAVLRPGVVTILENDGKQNKIFVSSGTITVNDDSSVQVLAEEAHPLESIDRSAAQEALS 108
           +A L+PGV+++ E +    K FVSSG   V+ +S   ++A EA PL+ ID +A Q+ L+
Sbjct: 114 IAELKPGVLSVHEGNDI-TKYFVSSGFAFVHANSIADIVAVEAVPLDQIDPAAVQQGLA 171


>04_03_0558 +
           17111138-17111996,17112474-17112564,17112647-17113268,
           17113378-17113457,17113871-17113937,17114138-17114263,
           17114333-17114415,17115334-17115777,17115834-17115927,
           17116038-17116124,17116474-17116594,17116671-17116709,
           17116828-17116997
          Length = 960

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = +1

Query: 346 FDNLFVIKDLITRSEGQCHFVTFGSICIVTYLKPTSYISDYTTECQ 483
           FD + +      R E  C  +TFG   I    KP      +T+EC+
Sbjct: 591 FDRICLTNQRTNRYELHCQMITFGK-AICRKSKPNCGACPFTSECK 635


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,416,581
Number of Sequences: 37544
Number of extensions: 257050
Number of successful extensions: 476
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)