Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_N14
         (595 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23170-1|AAC46699.1|  163|Caenorhabditis elegans Hypothetical pr...    66   2e-11
Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical p...    31   0.62 
Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical pr...    31   0.62 
U23524-2|ABD63241.1|  303|Caenorhabditis elegans Mirp k channel ...    29   2.5  
U58750-13|AAB00653.1|  616|Caenorhabditis elegans Hypothetical p...    29   3.3  
Z46266-11|CAA86417.1| 1170|Caenorhabditis elegans Hypothetical p...    28   5.8  
Z46266-10|CAA86416.1| 1207|Caenorhabditis elegans Hypothetical p...    28   5.8  
Z37979-2|CAA86035.1| 1170|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z37979-1|CAA86034.1| 1207|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z37140-8|CAA85503.1| 1207|Caenorhabditis elegans Hypothetical pr...    28   5.8  
AC025724-4|AAP31423.1|  612|Caenorhabditis elegans Hypothetical ...    28   5.8  
AC025724-3|AAG23379.2|  662|Caenorhabditis elegans Hypothetical ...    28   5.8  
AB011278-1|BAA24958.1|  280|Caenorhabditis elegans GAP-2-2 protein.    28   5.8  
AB011277-1|BAA24957.1|  269|Caenorhabditis elegans GAP-2-1 protein.    28   5.8  
AF101316-4|AAC69229.2|  296|Caenorhabditis elegans Serpentine re...    27   7.6  
AC084158-14|AAK68557.2|  207|Caenorhabditis elegans Hypothetical...    27   7.6  
AC084158-13|AAK68570.1|  337|Caenorhabditis elegans Hypothetical...    27   7.6  

>U23170-1|AAC46699.1|  163|Caenorhabditis elegans Hypothetical
           protein F58F12.1 protein.
          Length = 163

 Score = 65.7 bits (153), Expect = 2e-11
 Identities = 33/65 (50%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
 Frame = -3

Query: 302 LNTYLP-LAVLRPGVVTILENDGKQNKIFVSSGTITVNDDSSVQVLAEEAHPLESIDRSA 126
           L  ++P + VL+PGVV++  N+G   ++FVSSGT++VN D S QVLAEE   +E ID SA
Sbjct: 63  LANHVPTIGVLKPGVVSVTTNEGTVQRLFVSSGTLSVNIDGSCQVLAEEVLKVEEIDESA 122

Query: 125 AQEAL 111
           A+  L
Sbjct: 123 ARAEL 127



 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 20/43 (46%), Positives = 29/43 (67%)
 Frame = -2

Query: 408 DEMALTFAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTPG 280
           +E+ LTFA+ +   +   VVKQ+DVP+ +G  G+L  HVPT G
Sbjct: 29  EELRLTFASPDTAVFSNAVVKQVDVPTLAGMVGVLANHVPTIG 71


>Z83107-10|CAB05505.1| 1963|Caenorhabditis elegans Hypothetical
           protein F11C3.3 protein.
          Length = 1963

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -2

Query: 420 APKGDEMALTFAAGNKVFYDKQVVKQIDVPSF 325
           A KGD++ +  A GN+V   K++V++++ P F
Sbjct: 49  ATKGDQVTIVTARGNEVTLKKELVQEMNPPKF 80


>Z81499-3|CAB04089.1| 1963|Caenorhabditis elegans Hypothetical
           protein F11C3.3 protein.
          Length = 1963

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 12/32 (37%), Positives = 22/32 (68%)
 Frame = -2

Query: 420 APKGDEMALTFAAGNKVFYDKQVVKQIDVPSF 325
           A KGD++ +  A GN+V   K++V++++ P F
Sbjct: 49  ATKGDQVTIVTARGNEVTLKKELVQEMNPPKF 80


>U23524-2|ABD63241.1|  303|Caenorhabditis elegans Mirp k channel
           accessory subunitprotein 1, isoform b protein.
          Length = 303

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 9/25 (36%), Positives = 17/25 (68%)
 Frame = +3

Query: 210 RRYEDFILFPIIFKNCNNTRSKNSQ 284
           RR++  +  P+++ N NN  SKN++
Sbjct: 274 RRFDVTVFLPVVYNNVNNYNSKNAE 298


>U58750-13|AAB00653.1|  616|Caenorhabditis elegans Hypothetical
           protein F55G1.13 protein.
          Length = 616

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 17/66 (25%), Positives = 24/66 (36%)
 Frame = +1

Query: 394 QCHFVTFGSICIVTYLKPTSYISDYTTECQCHSDYLSFLIQIITNGNLLSAIFFPISDRR 573
           QC F  +G  C  T    TSY+  +       SDY  +   I T  +   A+        
Sbjct: 163 QCPFDYYGDKCQTTRSVQTSYVGCFDDSSASFSDYYVYSTTITTGTDCRDALISYREANP 222

Query: 574 TGTYQF 591
           T  Y +
Sbjct: 223 TSNYAY 228


>Z46266-11|CAA86417.1| 1170|Caenorhabditis elegans Hypothetical
           protein ZK899.8b protein.
          Length = 1170

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 390 FAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTP 283
           F AG  +  ++ V    D  +F+  +G+LP+H P+P
Sbjct: 32  FIAGRMLHRNRTVRMDGDRSAFARHWGLLPEHYPSP 67


>Z46266-10|CAA86416.1| 1207|Caenorhabditis elegans Hypothetical
           protein ZK899.8a protein.
          Length = 1207

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 390 FAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTP 283
           F AG  +  ++ V    D  +F+  +G+LP+H P+P
Sbjct: 89  FIAGRMLHRNRTVRMDGDRSAFARHWGLLPEHYPSP 124


>Z37979-2|CAA86035.1| 1170|Caenorhabditis elegans Hypothetical
           protein ZK899.8b protein.
          Length = 1170

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 390 FAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTP 283
           F AG  +  ++ V    D  +F+  +G+LP+H P+P
Sbjct: 32  FIAGRMLHRNRTVRMDGDRSAFARHWGLLPEHYPSP 67


>Z37979-1|CAA86034.1| 1207|Caenorhabditis elegans Hypothetical
           protein ZK899.8a protein.
          Length = 1207

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 390 FAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTP 283
           F AG  +  ++ V    D  +F+  +G+LP+H P+P
Sbjct: 89  FIAGRMLHRNRTVRMDGDRSAFARHWGLLPEHYPSP 124


>Z37140-8|CAA85503.1| 1207|Caenorhabditis elegans Hypothetical
           protein ZK899.8a protein.
          Length = 1207

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 390 FAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTP 283
           F AG  +  ++ V    D  +F+  +G+LP+H P+P
Sbjct: 89  FIAGRMLHRNRTVRMDGDRSAFARHWGLLPEHYPSP 124


>AC025724-4|AAP31423.1|  612|Caenorhabditis elegans Hypothetical
           protein Y67D8C.3b protein.
          Length = 612

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +3

Query: 378 YPQRRSMPFRHLWEHLHSYVLEADE---LHF*LHHGMPV 485
           YP RR  PF H  EH +S V   +E     F L +G+P+
Sbjct: 57  YPYRRVEPFEHTSEHGYSSVERYNEEVATRFLLGNGLPL 95


>AC025724-3|AAG23379.2|  662|Caenorhabditis elegans Hypothetical
           protein Y67D8C.3a protein.
          Length = 662

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +3

Query: 378 YPQRRSMPFRHLWEHLHSYVLEADE---LHF*LHHGMPV 485
           YP RR  PF H  EH +S V   +E     F L +G+P+
Sbjct: 107 YPYRRVEPFEHTSEHGYSSVERYNEEVATRFLLGNGLPL 145


>AB011278-1|BAA24958.1|  280|Caenorhabditis elegans GAP-2-2 protein.
          Length = 280

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 390 FAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTP 283
           F AG  +  ++ V    D  +F+  +G+LP+H P+P
Sbjct: 32  FIAGRMLHRNRTVRMDGDRSAFARHWGLLPEHYPSP 67


>AB011277-1|BAA24957.1|  269|Caenorhabditis elegans GAP-2-1 protein.
          Length = 269

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 390 FAAGNKVFYDKQVVKQIDVPSFSGAFGILPKHVPTP 283
           F AG  +  ++ V    D  +F+  +G+LP+H P+P
Sbjct: 89  FIAGRMLHRNRTVRMDGDRSAFARHWGLLPEHYPSP 124


>AF101316-4|AAC69229.2|  296|Caenorhabditis elegans Serpentine
           receptor, class sx protein8 protein.
          Length = 296

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 439 LKPTSY-ISDYTTECQCHSDYLSFLIQIITNGNLLSAIFFPISDRRTGTYQFI 594
           L+ T + I+  T  C C    + F I +    ++L  + FP++ R TGT +++
Sbjct: 73  LRQTCFNITFSTVFCYCVQSTIMFFILL----DILILVVFPVAHRNTGTLKYV 121


>AC084158-14|AAK68557.2|  207|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.13 protein.
          Length = 207

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 448 TSYISDYTTECQCHSDYLSFL 510
           T +   YT +CQC+S  L FL
Sbjct: 100 TDFCKKYTNDCQCYSMRLGFL 120


>AC084158-13|AAK68570.1|  337|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.25 protein.
          Length = 337

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 448 TSYISDYTTECQCHSDYLSFL 510
           T +   YT +CQC+S  L FL
Sbjct: 170 TDFCKKYTNDCQCYSMRLGFL 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,847,269
Number of Sequences: 27780
Number of extensions: 241670
Number of successful extensions: 523
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1258229602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)