Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_N13
(371 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein L30|Sc... 138 2e-34
SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein L30|Sc... 132 2e-32
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha... 29 0.18
SPAC977.14c |||aldo/keto reductase, unknown biological role|Schi... 27 1.2
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 26 1.6
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce... 26 1.6
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos... 24 6.7
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 24 8.8
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual 24 8.8
>SPAC1250.05 |rpl3002|rpl30-2, rpl30|60S ribosomal protein
L30|Schizosaccharomyces pombe|chr 1|||Manual
Length = 117
Score = 138 bits (335), Expect = 2e-34
Identities = 65/94 (69%), Positives = 76/94 (80%)
Frame = -3
Query: 291 APKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRK 112
AP +KK KK+ ++INS+LAL MKSGKY LGYK TLKTLR GKAKL++IA NAPPLRK
Sbjct: 8 APVAAVSKKGKKSGDTINSKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAANAPPLRK 67
Query: 111 XEIEYYAXLAKTGVHHYSGNNIEXGTACGKDDRV 10
E+EYYA L++ VHHYSGNNI+ GTACGK RV
Sbjct: 68 SELEYYAMLSRCSVHHYSGNNIDLGTACGKLFRV 101
>SPAC9G1.03c |rpl3001|rpl30-1, rpl30|60S ribosomal protein
L30|Schizosaccharomyces pombe|chr 1|||Manual
Length = 109
Score = 132 bits (319), Expect = 2e-32
Identities = 61/90 (67%), Positives = 72/90 (80%)
Frame = -3
Query: 279 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKXEIE 100
V KK KK+ ++IN++LAL MKSGKY LGYK TLKTLR GKAKL++IA N PPLRK E+E
Sbjct: 4 VVTKKSKKSGDTINAKLALTMKSGKYVLGYKSTLKTLRSGKAKLILIAGNCPPLRKSELE 63
Query: 99 YYAXLAKTGVHHYSGNNIEXGTACGKDDRV 10
YYA L+K VHHY+G NI+ GTACGK RV
Sbjct: 64 YYAMLSKANVHHYAGTNIDLGTACGKLFRV 93
>SPAC1834.01 |sup45||translation release factor
eRF1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 433
Score = 29.5 bits (63), Expect = 0.18
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = -3
Query: 267 KQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVI 142
++KK I+ ++L SGKYC G T+ L++G + ++
Sbjct: 279 QEKKLIQRFFDEISL--DSGKYCFGVVDTMNALQEGAVETLL 318
>SPAC977.14c |||aldo/keto reductase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 351
Score = 26.6 bits (56), Expect = 1.2
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 159 KAKLVIIAKNAPPLRKXEIEYYAXLAKTGVHHYSGNNIEXGTACG 25
++ +VI++K P+RK I+ + L+ GVH ++ E CG
Sbjct: 87 RSSIVILSKCFFPVRKDLIKIFGDLSSRGVHFL--DSPELANQCG 129
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 26.2 bits (55), Expect = 1.6
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +1
Query: 268 LCCNHFGSVNANESSPRAQMEKK-RLKTHRP 357
+ C+H S+NAN S+ RA M + RL P
Sbjct: 146 VACDHEFSINANVSAARALMNRALRLNQENP 176
>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 154
Score = 26.2 bits (55), Expect = 1.6
Identities = 17/58 (29%), Positives = 32/58 (55%)
Frame = -3
Query: 291 APKMVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPL 118
APK + KK KT++ + + ++ G K+ +K +R+G+ LVI+A + P+
Sbjct: 33 APKKLN-KKMMKTVKKASKQKHILR-------GVKEVVKAVRKGEKGLVILAGDISPM 82
>SPAC14C4.13 |rad17||RFC related checkpoint protein
Rad17|Schizosaccharomyces pombe|chr 1|||Manual
Length = 606
Score = 24.2 bits (50), Expect = 6.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 302 LAFTLPKWLQQRNRKRPSSQLTPAL 228
L ++L +WL N K PS+Q + L
Sbjct: 129 LGYSLIEWLNPMNLKEPSNQESDTL 153
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 23.8 bits (49), Expect = 8.8
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 208 SRFHHQSKAGVN*LDGLFLFLCCNHFGSVNAN 303
+R ++ GV + LF CC FG+V N
Sbjct: 1143 NRINNSKPLGVFRIHDPSLFACCYQFGAVFVN 1174
>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 23.8 bits (49), Expect = 8.8
Identities = 13/34 (38%), Positives = 16/34 (47%)
Frame = -3
Query: 105 IEYYAXLAKTGVHHYSGNNIEXGTACGKDDRVCT 4
IE A LAK + +E A KDD+ CT
Sbjct: 272 IEQLASLAKLNIETQIQYFVEDAEAYIKDDKFCT 305
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,482,452
Number of Sequences: 5004
Number of extensions: 26370
Number of successful extensions: 59
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -