Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_N13
(371 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_1199 - 9657169-9657254,9657369-9657395,9657485-9657553,965... 137 2e-33
05_05_0300 + 23932947-23933196,23934022-23934123,23934249-239343... 130 3e-31
01_06_1103 - 34543915-34543955,34544069-34544137,34544294-345443... 125 1e-29
03_05_0830 + 28034179-28035492 29 1.2
06_01_1127 + 9294079-9294193,9294300-9294369,9294611-9294716,929... 27 3.6
08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,893... 27 4.7
07_03_1085 - 23851852-23853165 27 4.7
10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,826... 26 8.2
03_05_0232 + 22174516-22174768,22175278-22175471,22175557-221756... 26 8.2
03_01_0283 + 2193632-2195182 26 8.2
>01_01_1199 -
9657169-9657254,9657369-9657395,9657485-9657553,
9657922-9658023,9659895-9660000,9660145-9660165
Length = 136
Score = 137 bits (332), Expect = 2e-33
Identities = 64/92 (69%), Positives = 74/92 (80%)
Frame = -3
Query: 282 MVAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKXEI 103
MVAAKK KK+ ++IN++L LVMKSGKY LGYK L+TLR KAKLVII+ N PPLRK EI
Sbjct: 1 MVAAKKTKKSTDNINNKLQLVMKSGKYTLGYKTVLRTLRNSKAKLVIISNNCPPLRKSEI 60
Query: 102 EYYAXLAKTGVHHYSGNNIEXGTACGKDDRVC 7
EYYA LAK VHH+ GNN++ GTACGK RVC
Sbjct: 61 EYYAMLAKVTVHHFHGNNVDLGTACGKYFRVC 92
>05_05_0300 +
23932947-23933196,23934022-23934123,23934249-23934317,
23934406-23934446
Length = 153
Score = 130 bits (314), Expect = 3e-31
Identities = 59/91 (64%), Positives = 69/91 (75%)
Frame = -3
Query: 279 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKXEIE 100
V A QKK+ ++IN++L LVMKSGKY LGYK LKTLR K KL+I+A N PPLRK EIE
Sbjct: 43 VVAMMQKKSTDNINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLIILANNCPPLRKSEIE 102
Query: 99 YYAXLAKTGVHHYSGNNIEXGTACGKDDRVC 7
YYA L K VHH+ GNN++ GTACGK RVC
Sbjct: 103 YYAMLGKVSVHHFHGNNVDLGTACGKYYRVC 133
>01_06_1103 -
34543915-34543955,34544069-34544137,34544294-34544395,
34545603-34545708,34545998-34546079,34546850-34547142
Length = 230
Score = 125 bits (302), Expect = 1e-29
Identities = 57/85 (67%), Positives = 65/85 (76%)
Frame = -3
Query: 261 KKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPPLRKXEIEYYAXLA 82
KK E IN++L LVMKSGKY LGYK LKTLR K KLVI+A N PPLRK EIEYYA L
Sbjct: 126 KKNAEGINNKLQLVMKSGKYTLGYKTVLKTLRNSKGKLVIVANNCPPLRKSEIEYYAMLG 185
Query: 81 KTGVHHYSGNNIEXGTACGKDDRVC 7
K V+H++GNN++ GTACGK RVC
Sbjct: 186 KVSVYHFNGNNVDLGTACGKYYRVC 210
>03_05_0830 + 28034179-28035492
Length = 437
Score = 29.1 bits (62), Expect = 1.2
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -3
Query: 213 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 130
+GKY G TLKTL G + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKTLEMGAVETLIVWEN 326
>06_01_1127 +
9294079-9294193,9294300-9294369,9294611-9294716,
9295665-9295805,9296377-9296475
Length = 176
Score = 27.5 bits (58), Expect = 3.6
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
Frame = -3
Query: 231 LALVMKSGKY-CL--GYKQTLKTLRQGKAKLVIIAKNAPPL 118
L LV ++ + CL G K+ +K++R+G+ L IIA N P+
Sbjct: 33 LKLVRRASEAKCLKRGVKEVVKSIRRGQKGLCIIAGNISPI 73
>08_01_0906 + 8933230-8933797,8933894-8934543,8937956-8938615,
8939751-8939817,8940421-8940724,8942993-8942996,
8944539-8946449
Length = 1387
Score = 27.1 bits (57), Expect = 4.7
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -3
Query: 279 VAAKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQGKAKLVIIAKNAP 124
V++ Q +ES+ + L V SG Y LG+KQ L+T +G I+ P
Sbjct: 1333 VSSSLQFSGLESMET-LKEVWLSGSYELGFKQQLETELKGNENEPILELEKP 1383
>07_03_1085 - 23851852-23853165
Length = 437
Score = 27.1 bits (57), Expect = 4.7
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -3
Query: 213 SGKYCLGYKQTLKTLRQGKAKLVIIAKN 130
+GKY G TLK L G + +I+ +N
Sbjct: 299 TGKYVFGVDDTLKALEMGAVETLIVWEN 326
>10_05_0026 +
8262237-8262899,8263300-8263509,8263599-8265480,
8265508-8265704,8275672-8275824
Length = 1034
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = -3
Query: 294 YAPKMVA--AKKQKKTIESINSRLALVMKSGKYCLGYKQTLKTLRQ 163
YAP+ V ++Q+K +E +N L+ + +G+Y K K +RQ
Sbjct: 375 YAPEDVRNDEERQEKFLEGLNDELSYPLMTGEYHDFQKLVDKAIRQ 420
>03_05_0232 +
22174516-22174768,22175278-22175471,22175557-22175604,
22176707-22176784,22178073-22178145,22178406-22178577,
22179652-22180083,22180209-22180400,22180696-22180771
Length = 505
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 216 KSGKYCLGYKQTLKTLRQGKAKLVIIAKNAPP 121
KS Y GY + +T R+GK + I K+ PP
Sbjct: 18 KSAIYLWGYNHSGQTARKGKECHLRIPKSLPP 49
>03_01_0283 + 2193632-2195182
Length = 516
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 153 LLCLVEEFSKFACILSNIFPISSPKQGGS*LTRW 254
LLC VE FS C + + + + K S T W
Sbjct: 4 LLCFVEIFSILCCCIIYYYHLQTKKASASEPTEW 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,988,056
Number of Sequences: 37544
Number of extensions: 173399
Number of successful extensions: 391
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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