Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_N11
(498 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit Ssr1|Schizosa... 29 0.39
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 27 1.6
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 26 2.7
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ... 26 3.6
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 26 3.6
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 25 4.8
SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces pom... 25 4.8
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 25 4.8
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 25 6.3
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo... 25 6.3
SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8 |Schizos... 25 6.3
SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter Itr1|Schizo... 25 8.4
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr... 25 8.4
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3... 25 8.4
>SPAC17G6.10 |ssr1||SWI/SNF and RSC complex subunit
Ssr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 29.1 bits (62), Expect = 0.39
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -3
Query: 394 SKSFDIEVNGKQLTVTIDRLKPAYITRDDGK 302
S+S+D+E+NGK L + D L Y+T ++ K
Sbjct: 403 SESYDVEMNGKSLEDS-DSLSELYLTNEEKK 432
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 27.1 bits (57), Expect = 1.6
Identities = 10/31 (32%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Frame = -2
Query: 422 WPLQSLK-KRIEIVRH*GKWQTINCHHRSPK 333
W +Q + ++++ + H G+W T+ HH++PK
Sbjct: 462 WIIQGCRDQKLDELYH-GEWNTVPGHHKNPK 491
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 26.2 bits (55), Expect = 2.7
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -3
Query: 376 EVNGKQLTVTIDRLKPAYITRDDGKREDKQKTSEASEEHQRPVQKTRSGRTVTFPD 209
+ + Q T++ KP+ + +G ED Q TS EEH KT+ + F D
Sbjct: 149 QASSAQATLSFVASKPS---QPEGNLEDIQ-TSSQEEEHDNEKDKTKESKAKGFLD 200
>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 3.6
Identities = 18/58 (31%), Positives = 28/58 (48%)
Frame = -1
Query: 327 PISRETMAREKTNRRPARRAKNISVQYKRREAAVQSPSRTTIDRSYRSRRGSTVASSC 154
P+S A + T RRP RR+++ ++ E V+ T+D S SR G + C
Sbjct: 200 PLSSTKHAPQSTERRPVRRSES-RLKQTNGEPLVK---HDTLDSSDISREGEQLYCYC 253
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 3.6
Identities = 13/59 (22%), Positives = 26/59 (44%)
Frame = -1
Query: 333 NLPISRETMAREKTNRRPARRAKNISVQYKRREAAVQSPSRTTIDRSYRSRRGSTVASS 157
N+P S +R+P R ++ + R+ + S R T ++ ++ S +A S
Sbjct: 35 NIPRSSAKTKEHSADRKPHRNSEKKTQGMPRKNQQLASSERKTKNKKRLEKQSSAIADS 93
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 4.8
Identities = 19/64 (29%), Positives = 29/64 (45%)
Frame = -1
Query: 318 RETMAREKTNRRPARRAKNISVQYKRREAAVQSPSRTTIDRSYRSRRGSTVASSCHGYLS 139
R+ +R +R P+ R+++ Y R SR+ R Y R S+ +S H Y
Sbjct: 151 RDRSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSR--RRYEER--SSRSSRAHDYDY 206
Query: 138 ADLR 127
DLR
Sbjct: 207 EDLR 210
>SPBC17G9.11c |pyr1||pyruvate carboxylase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1185
Score = 25.4 bits (53), Expect = 4.8
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -3
Query: 493 ELNTTSHVFLRQGPLRKSLEPPYI--GPYKVLRRGSKSFDIEVNGKQLTVTIDRLKPAYI 320
E+N HV + QG K+L ++ GP R G + E+NG+ VT++ K A
Sbjct: 1047 EMNEEMHVEIDQG---KTLIVKFVALGPLNP-RTGQREVYFELNGENRHVTVEDKKAAIE 1102
Query: 319 T 317
T
Sbjct: 1103 T 1103
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 25.4 bits (53), Expect = 4.8
Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
Frame = -1
Query: 288 RRPARRAKNISVQYKRREAAVQSPSR--TTIDRSYRSRRGSTVASSCHGYLSADLRARIR 115
RRP R K I + + A + + + + +AS H Y+ ADL A +R
Sbjct: 433 RRPGRLEKEIEIGIPDKSARLDIIKLLLSGVPNEINDAQLEDLASRTHAYVGADLAAVVR 492
Query: 114 *CVRAPIRS-QRAAALXQVTPG 52
A +R+ +R +L + T G
Sbjct: 493 ---EAALRAIKRTISLQKDTSG 511
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 25.0 bits (52), Expect = 6.3
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Frame = -3
Query: 340 RLKPAY---ITRDDGKREDKQKTSEASEEHQRPVQKTRSGR 227
R KP Y R R + + E SEE RP+ + R+ R
Sbjct: 113 RSKPKYKPGTRRSTRLRNRRSQDEEESEEEHRPILRERTSR 153
>SPBC409.09c |mis13|cnl1|kinetochore protein
Mis13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 329
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -2
Query: 314 RRWQERRQTEDQRGERRTSASSTKDEKRPYSHLP 213
R+ + RR + DQRG +R S+ T E P++ +P
Sbjct: 60 RKGKGRRSSLDQRG-KRASSIGTGFEALPHADVP 92
>SPAC22G7.08 |ppk8||serine/threonine protein kinase Ppk8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 513
Score = 25.0 bits (52), Expect = 6.3
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +2
Query: 209 VREGDCTAASRLLYWTLMFFARLAGLLFVFSLAIVSRDI 325
+ +G C+A L MFF L G+ ++ SL I RDI
Sbjct: 331 ITKGHCSA----LKADQMFFQLLDGVAYMHSLGIAHRDI 365
>SPAC4F8.15 |itr1|SPAC7D4.01|myo-inositol transporter
Itr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 575
Score = 24.6 bits (51), Expect = 8.4
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +2
Query: 251 WTLMFFARLAGLLFVFSLAIVS 316
W L F A + GLLF + ++S
Sbjct: 88 WVLAFAAGIGGLLFGYDTGVIS 109
>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 541
Score = 24.6 bits (51), Expect = 8.4
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = -2
Query: 371 KWQTINCHHRSPKTCLYHA 315
KW TI+ R+P++ +Y A
Sbjct: 300 KWHTIHERQRNPRSAIYQA 318
>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 455
Score = 24.6 bits (51), Expect = 8.4
Identities = 17/57 (29%), Positives = 29/57 (50%)
Frame = -1
Query: 330 LPISRETMAREKTNRRPARRAKNISVQYKRREAAVQSPSRTTIDRSYRSRRGSTVAS 160
LPI E ++ KT RP + S+++ +E ++ R T + ++ R S VAS
Sbjct: 21 LPIDAEDLSSRKTYARPVLIRQYRSLRFANKE---ENICRLTPNSAFVPVRDSAVAS 74
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,006,932
Number of Sequences: 5004
Number of extensions: 40796
Number of successful extensions: 135
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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