Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_N11
         (498 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.11 
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   4.1  
AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein ...    22   4.1  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    21   7.1  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   9.4  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   9.4  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    21   9.4  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 27.1 bits (57), Expect = 0.11
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -2

Query: 482  DIPCVLEARTPPKVARTTIH 423
            D+PCVL A TP  V    +H
Sbjct: 1103 DLPCVLRASTPAPVVLEAVH 1122


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = -2

Query: 356 NCHHRSPKTCLYHARRWQERRQTEDQRGERRTSASSTKDEKR 231
           N      K C  +     + RQ ++   + R+   S KDEKR
Sbjct: 21  NASQAHKKLCAVYGDEALKERQCQNWFDKFRSGDFSLKDEKR 62


>AB083209-1|BAC54133.1|   87|Apis mellifera hypothetical protein
           protein.
          Length = 87

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 190 IATVDSSPGR*LYGRFSSFVLDADVLRSPR 279
           +ATV S     L+  F  ++  A  +R PR
Sbjct: 14  LATVSSQDYSQLFAGFGPYIRQAVAMRDPR 43


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = -2

Query: 473 CVLEARTPPKVARTTIHW 420
           C    RTP K ++T++H+
Sbjct: 355 CNTLERTPSKCSQTSVHY 372


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = -1

Query: 318 RETMAREKTNRRPARRAKNISVQYKRREAAVQSPSRTTIDRS 193
           +E +  E+TNR+   R++       + E   +    T+ +RS
Sbjct: 25  KEKLLEERTNRKRNSRSREREQNSYKNEREYRKYRETSKERS 66


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/42 (23%), Positives = 20/42 (47%)
 Frame = -1

Query: 318 RETMAREKTNRRPARRAKNISVQYKRREAAVQSPSRTTIDRS 193
           +E +  E+TNR+   R++       + E   +    T+ +RS
Sbjct: 25  KEKLLEERTNRKRNSRSREREQNSYKNEREYRKYRETSKERS 66


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = -1

Query: 261 ISVQYKRREAAVQSPSRTTIDRSYRS 184
           I+ Q   R +   SP++    R YRS
Sbjct: 678 ITFQDVARRSVANSPTKNADSREYRS 703


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,491
Number of Sequences: 438
Number of extensions: 2928
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)