Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_N10
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyce... 173 1e-44
SPAC22F8.06 |pam1||20S proteasome component beta 6|Schizosacchar... 51 1e-07
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 36 0.005
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz... 27 1.8
SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|... 27 3.2
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 26 4.3
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 25 7.5
>SPBC577.10 |||20S proteasome component beta 7|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 262
Score = 173 bits (422), Expect = 1e-44
Identities = 86/218 (39%), Positives = 133/218 (61%), Gaps = 6/218 (2%)
Frame = -1
Query: 669 SASPITTXTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADF 490
+ PI T ++V+ +KF G +IA D L SYGSLARF D R+ KV D ++G GGD +D+
Sbjct: 36 TVQPIVTGSSVLALKFADGVMIAADNLASYGSLARFYDVERLTKVGDNTIVGAGGDISDY 95
Query: 489 QYLKDIIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGI--QDG 316
Q ++ ++++ I E GDG L+P +H +L++VLY +R+K+DP WN +VAG+ ++
Sbjct: 96 QQIQRLLEKLEIKEGNYGDGYALQPSYIHEYLSKVLYARRNKLDPYWNQLIVAGVDGENK 155
Query: 315 EPFLGAVDKLGTAYEDAVISNGLGAYMATPLLRDAVDKG---PLDQETAIAVVRKSMEVL 145
EP++ D GT Y I+ G ++A P+LR A D L +E+A A + + M VL
Sbjct: 156 EPYVAFADLRGTTYSAPAIATGFAMHLALPMLRKATDDDRWKTLSKESARATIDECMRVL 215
Query: 144 FYRDARAFQRYQLGVXTAEGXK-STDEEXKHDWA*AQQ 34
FYRDAR+ ++ + T EG + TD+ WA A++
Sbjct: 216 FYRDARSLNKFSVATITPEGIEFQTDQSVSSKWAFAEK 253
>SPAC22F8.06 |pam1||20S proteasome component beta
6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 225
Score = 51.2 bits (117), Expect = 1e-07
Identities = 43/147 (29%), Positives = 69/147 (46%), Gaps = 1/147 (0%)
Frame = -1
Query: 642 TVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKDIIQQ 463
T + + D ++AGDT G R PRV +V D +++G G AD L IQQ
Sbjct: 15 TTVAIAGDGFAILAGDTRSVNGYNINTRFQPRVHEVGDDLVIGASGFEADALALVKRIQQ 74
Query: 462 KIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGI-QDGEPFLGAVDKL 286
+ ID ++ +S C + +LY KR P + VAGI ++G+ + + D +
Sbjct: 75 R-IDLYHDNHERKMSAQSCACMVRTLLYGKR--FFPYYVYTTVAGIDKEGKGEIYSFDPV 131
Query: 285 GTAYEDAVISNGLGAYMATPLLRDAVD 205
G+ + + G A TP L + V+
Sbjct: 132 GSYEREWCRAGGSAANFITPFLDNQVN 158
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 35.9 bits (79), Expect = 0.005
Identities = 40/176 (22%), Positives = 82/176 (46%), Gaps = 2/176 (1%)
Frame = -1
Query: 654 TTXTTVIGVKFDKGCVIAG-DTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLK 478
+T TT++GV K C++ G DT + G + ++C ++ ++ I G AD +++
Sbjct: 33 STGTTIVGV-IAKDCIVLGADTRATAGPIIADKNCKKLHLISPNIWCAGAGTAADTEFVT 91
Query: 477 DIIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQDGE-PFLG 301
+I I KPR + LT +L + +Y+V G D + P L
Sbjct: 92 SMISSNIELHSLY---TNRKPRVVTA-LT-MLKQHLFRYQGHIGAYLVLGGYDCKGPHLF 146
Query: 300 AVDKLGTAYEDAVISNGLGAYMATPLLRDAVDKGPLDQETAIAVVRKSMEVLFYRD 133
+ G++ + ++ G G+ A +L + + L++ A+ +V++++E + D
Sbjct: 147 TIAAHGSSDKLPYVALGSGSLAAISVL-ETKYQPDLERHEAMELVKEAIEAGIFND 201
>SPCC794.08 |||HEAT repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 798
Score = 27.5 bits (58), Expect = 1.8
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 262 HSIFICCSQFINSSEKGFTILNTGDHVAVPERIH 363
HSIF CC + ++SS I+N+ +V VP I+
Sbjct: 309 HSIFFCCLRCLSSSR----IVNSETNVMVPYMIY 338
>SPCC18.12c |||rRNA processing protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 260
Score = 26.6 bits (56), Expect = 3.2
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Frame = -1
Query: 495 DFQYLKDIIQQKIIDERCVGDGLQ--LKPRSLHCWLTRVLYNKRSKM 361
D +LKD+ QQKI + + +Q +KP C + R LY+K ++
Sbjct: 31 DADFLKDLSQQKIDIQAALARTVQGAIKPMITQCCI-RQLYSKSDEL 76
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 26.2 bits (55), Expect = 4.3
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 612 CVIAGDTLGSYGSLARFRDCPRVMKVNDLILL 517
C AG +LG Y +L+ D + + DL+ L
Sbjct: 1822 CAFAGHSLGEYSALSAMGDVLSIEALVDLVFL 1853
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 25.4 bits (53), Expect = 7.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +3
Query: 228 ESPCKLLARSRSQHLHMLFPIYQQ 299
E+ KLLA+S ++H+ LF YQ+
Sbjct: 585 ENVAKLLAQSTNKHVATLFSDYQE 608
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,532,511
Number of Sequences: 5004
Number of extensions: 49139
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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