Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_N10
(669 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0728 - 19771975-19772093,19772131-19772224,19772322-197725... 148 3e-36
02_05_0884 - 32483735-32483866,32484417-32484491,32484707-324847... 38 0.005
05_01_0588 + 5278013-5278153,5278641-5278782,5278923-5279019,527... 37 0.017
06_01_0285 - 2090427-2090558,2091045-2091119,2091334-2091407,209... 36 0.022
03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871 33 0.21
05_07_0290 + 29016410-29018920 29 3.3
12_02_0578 - 20753834-20754418 29 4.4
04_04_1296 + 32437089-32437386,32437422-32437429 29 4.4
12_02_0981 - 25027336-25027596,25028017-25028361,25028681-250288... 28 5.9
06_01_0837 - 6355315-6355342,6356185-6356361,6356579-6356662,635... 28 5.9
02_01_0251 - 1652356-1652522,1652564-1652608,1652658-1652733,165... 28 5.9
>09_04_0728 -
19771975-19772093,19772131-19772224,19772322-19772507,
19772596-19772767,19772854-19772983,19773060-19773136,
19774109-19774194,19774508-19774585,19775916-19776045,
19776379-19776423,19776508-19776618,19776801-19777057,
19777153-19777302,19777899-19778008,19778426-19778546
Length = 621
Score = 148 bits (359), Expect = 3e-36
Identities = 71/196 (36%), Positives = 116/196 (59%), Gaps = 4/196 (2%)
Frame = -1
Query: 660 PITTXTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYL 481
P T +++I +K+ G ++A DT SYGS R++ R+ V L+G G+++DFQ +
Sbjct: 365 PYVTGSSIIALKYKDGVIMASDTGASYGSTLRYKSVERIKAVGKHSLIGASGEFSDFQEI 424
Query: 480 KDIIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQDG----E 313
+ + + + DG L P+ +H +LTRV+YN+R+K DPLWNS V+ G++ G E
Sbjct: 425 LRYLDELTLSDHMWDDGNSLGPKEVHSYLTRVMYNRRNKFDPLWNSLVIGGVKKGPKGEE 484
Query: 312 PFLGAVDKLGTAYEDAVISNGLGAYMATPLLRDAVDKGPLDQETAIAVVRKSMEVLFYRD 133
+LG V+ +GT +E+ I+ G G +MA P+LR + + E A+ +V K + VL YRD
Sbjct: 485 KYLGMVNMIGTHFEENHIATGFGNHMAIPILRTEW-REDMTFEEAVKLVEKCLLVLLYRD 543
Query: 132 ARAFQRYQLGVXTAEG 85
+ ++Q+ T EG
Sbjct: 544 RSSINKFQIAKITTEG 559
>02_05_0884 -
32483735-32483866,32484417-32484491,32484707-32484780,
32485180-32485291,32485476-32485548,32485674-32485729,
32486046-32486122,32486799-32486940
Length = 246
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = -1
Query: 645 TTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKDIIQ 466
TT++GV +D G V+A D+ S G R ++ ++ D + + G AD Q + D ++
Sbjct: 26 TTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQVISDYVR 85
>05_01_0588 +
5278013-5278153,5278641-5278782,5278923-5279019,
5279130-5279199,5279284-5279388,5279531-5279629,
5280062-5280152,5280238-5280311
Length = 272
Score = 36.7 bits (81), Expect = 0.017
Identities = 35/175 (20%), Positives = 74/175 (42%)
Frame = -1
Query: 657 ITTXTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLK 478
+ T TT++G+ F G V+ DT + G + ++C ++ + I G AD + +
Sbjct: 35 LKTGTTIVGLVFQDGVVLGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVT 94
Query: 477 DIIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQDGEPFLGA 298
D++ ++ R G + + + L L++ + + + V+ G+ P L
Sbjct: 95 DMVSSQLQLHR-YATGRESRVVTSLTLLKSHLFSYQGHVSA---ALVLGGVDVTGPHLHT 150
Query: 297 VDKLGTAYEDAVISNGLGAYMATPLLRDAVDKGPLDQETAIAVVRKSMEVLFYRD 133
V G+ + G G+ A + +G L +E I +V +++ + D
Sbjct: 151 VYPHGSTDTLPFATMGSGSLAAMSVFESKYKEG-LTREEGIQLVAEAIRGGIFND 204
>06_01_0285 -
2090427-2090558,2091045-2091119,2091334-2091407,
2091792-2091903,2092036-2092108,2092291-2092346,
2092679-2092755,2093384-2093525
Length = 246
Score = 36.3 bits (80), Expect = 0.022
Identities = 17/60 (28%), Positives = 32/60 (53%)
Frame = -1
Query: 645 TTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKDIIQ 466
TT++GV +D G V+A D+ S G R ++ ++ D + + G AD Q + + ++
Sbjct: 26 TTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADTQVISEYVR 85
>03_05_0782 - 27658855-27659211,27660417-27660540,27660714-27660871
Length = 212
Score = 33.1 bits (72), Expect = 0.21
Identities = 43/188 (22%), Positives = 79/188 (42%), Gaps = 1/188 (0%)
Frame = -1
Query: 639 VIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKDIIQQK 460
VIGV V+A DT L D +VM ++ L+G G+ D + I QK
Sbjct: 4 VIGVVGRDFAVVAADTSAVQSILVHKTDEDKVMVLDSHKLMGASGEPGDRVQFTEFI-QK 62
Query: 459 IIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGI-QDGEPFLGAVDKLG 283
+ + + L + TR + +P + + ++AG D L +D +
Sbjct: 63 NLHLYQFRNNIPLSTAAT-ANFTRGELATALRKNPYYVNVLLAGYDSDVGASLYYIDYIA 121
Query: 282 TAYEDAVISNGLGAYMATPLLRDAVDKGPLDQETAIAVVRKSMEVLFYRDARAFQRYQLG 103
T ++ + G G+Y L+ D + + + E A+ +V K ++ + R A Q + +
Sbjct: 122 TFHKIEKGAFGYGSYFCLSLM-DKLYRPDMSVEEAVDLVDKCIKEIRLRLVVAPQNFIIK 180
Query: 102 VXTAEGXK 79
+ EG +
Sbjct: 181 IVDKEGAR 188
>05_07_0290 + 29016410-29018920
Length = 836
Score = 29.1 bits (62), Expect = 3.3
Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Frame = -1
Query: 552 PRVMKVNDLILLGC-GGDYADFQYL-----KDIIQQKIID-----ERCVGDGLQLKPRSL 406
P V+ LI C G+Y D Y KD +Q ++ C G LQ K + L
Sbjct: 426 PNVVSWTSLISGSCHNGEYEDSFYFCHEMQKDGVQPSLVTMSVLLRACAGLALQKKGKEL 485
Query: 405 HCWLTRVLYN 376
HC+ R Y+
Sbjct: 486 HCFALRRAYD 495
>12_02_0578 - 20753834-20754418
Length = 194
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Frame = -1
Query: 228 PLLRDAVDK-----GPLDQETAIAVVRKSMEVLFYRDARAFQRYQ-LGV 100
PL R AVD P+D+ + +A+V S +F R R F+R + LGV
Sbjct: 78 PLRRVAVDPVRRSASPVDRRSTVALVIPSRAAVFLRSVRRFRRLRCLGV 126
>04_04_1296 + 32437089-32437386,32437422-32437429
Length = 101
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 186 LGPEVLYPLRPSAEESPCKLLARSRSQHLHMLFPIYQQLRERVHH 320
LGPE + P SA ++P +LL R ++HL + RER H
Sbjct: 33 LGPESMQPA--SAMQAPPQLLLRYSNRHLRNAVAVPAYERERESH 75
>12_02_0981 -
25027336-25027596,25028017-25028361,25028681-25028827,
25028906-25029970
Length = 605
Score = 28.3 bits (60), Expect = 5.9
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Frame = -1
Query: 501 YADFQYLKDIIQQKIIDERCVGD----GLQLKPRSLHCWLTRVLY 379
+AD++ L D +++D V D G PR LH W R LY
Sbjct: 42 HADWRGLPDAAVSRVLDRLPVVDLFRLGYLFSPRWLHIWRARPLY 86
>06_01_0837 -
6355315-6355342,6356185-6356361,6356579-6356662,
6356989-6357542,6358086-6358322
Length = 359
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = -1
Query: 549 RVMKVNDLILLGCGGDYADFQYLKDIIQQKI 457
RVM V+DL+LLG YAD ++ ++ + K+
Sbjct: 48 RVMMVSDLMLLGSDATYAD-RFFRNHVMSKL 77
>02_01_0251 -
1652356-1652522,1652564-1652608,1652658-1652733,
1652976-1653041,1653120-1653238,1653334-1653508,
1653604-1653881,1654253-1654436,1654455-1654550,
1654872-1655012,1655091-1655123
Length = 459
Score = 28.3 bits (60), Expect = 5.9
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +1
Query: 289 FINSSEKGFTILNTGDHVAVPERIHLAPLVVED 387
F+ EKG+ +LN H E++ AP++ +D
Sbjct: 105 FLAPQEKGYFVLNDYFHFVDEEQVQPAPVIAQD 137
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,452,161
Number of Sequences: 37544
Number of extensions: 366844
Number of successful extensions: 1184
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1183
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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