Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_N10
(669 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical pr... 143 1e-34
L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome bet... 33 0.14
AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome co... 33 0.14
AC084155-1|AAG23361.2| 352|Caenorhabditis elegans Hypothetical ... 29 2.3
AL132841-2|CAB60332.1| 469|Caenorhabditis elegans Hypothetical ... 29 3.0
Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical pr... 28 5.2
U21320-7|AAA62533.1| 558|Caenorhabditis elegans Hypothetical pr... 27 9.1
>Z81079-4|CAB03081.1| 236|Caenorhabditis elegans Hypothetical
protein F39H11.5 protein.
Length = 236
Score = 143 bits (346), Expect = 1e-34
Identities = 79/221 (35%), Positives = 133/221 (60%), Gaps = 12/221 (5%)
Frame = -1
Query: 663 SPITTXTTVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQY 484
+P T T+VI +++ G V+ D + SYG +AR+++ R KVND +L+ GGD+ADF +
Sbjct: 12 NPTCTGTSVIALQYKTGVVVLTDRVVSYGKMARYKNVSRQYKVNDNVLIAFGGDHADFHW 71
Query: 483 LKDIIQQKIIDERCVGDGLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQDGE--- 313
L+++I+++++ + + P++LH +LT +LY KR KM+P+WN+ VVAG+++ E
Sbjct: 72 LQNVIERQVLLWKRFDQ--DIGPKALHGYLTSLLYAKRCKMNPVWNTLVVAGVEEEEKNN 129
Query: 312 -----PFLGAVDKLGTAYEDAVISNGLGAYMATPLLRDAVDK--GPLDQETAIAVVRKSM 154
PF+G + + G AY+ I+ GLGA++ + D K L +E A AV+RKS+
Sbjct: 130 KETSTPFIGVITQKGCAYQVKHIATGLGAFLLNQAVEDEWRKKGEDLSREEAEAVLRKSL 189
Query: 153 EVLFYRDARAFQRYQLG-VXTAEG-XKSTDEEXKHDWA*AQ 37
E+ Y D A +++G V EG +E+ DW+ A+
Sbjct: 190 ELTLYHDCVADNEFEIGRVDATEGVVLGKEEKIIGDWSIAE 230
>L14745-10|AAK71356.1| 258|Caenorhabditis elegans Proteasome beta
subunit protein 6 protein.
Length = 258
Score = 33.5 bits (73), Expect = 0.14
Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 2/132 (1%)
Frame = -1
Query: 609 VIAGDTLGSYGSLARF-RDCPRVMKVNDLILLGCGGDYADFQYLKDIIQQKIIDERCVGD 433
++A DT + + RD ++ +ND I+L G Y D LK ++Q ++ R
Sbjct: 64 IVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLHKYR-FDY 122
Query: 432 GLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQD-GEPFLGAVDKLGTAYEDAVIS 256
+ L+R LY +R P + ++AGI + G+ + + D +G +
Sbjct: 123 RSDMSVDLCAELLSRNLYYRR--FFPYYTGAILAGIDEHGKGAVFSYDPIGCIERLGYSA 180
Query: 255 NGLGAYMATPLL 220
+G M P L
Sbjct: 181 SGAAEPMIIPFL 192
>AF303265-1|AAG50223.1| 258|Caenorhabditis elegans proteasome
component C5 protein.
Length = 258
Score = 33.5 bits (73), Expect = 0.14
Identities = 32/132 (24%), Positives = 57/132 (43%), Gaps = 2/132 (1%)
Frame = -1
Query: 609 VIAGDTLGSYGSLARF-RDCPRVMKVNDLILLGCGGDYADFQYLKDIIQQKIIDERCVGD 433
++A DT + + RD ++ +ND I+L G Y D LK ++Q ++ R
Sbjct: 64 IVASDTRMTQNDINILTRDAEKIQILNDNIILTTSGFYGDVLQLKKVLQSRLHKYR-FDY 122
Query: 432 GLQLKPRSLHCWLTRVLYNKRSKMDPLWNSYVVAGIQD-GEPFLGAVDKLGTAYEDAVIS 256
+ L+R LY +R P + ++AGI + G+ + + D +G +
Sbjct: 123 RSDMSVDLCAELLSRNLYYRR--FFPYYTGAILAGIDEHGKGAVFSYDPIGCIERLGYSA 180
Query: 255 NGLGAYMATPLL 220
+G M P L
Sbjct: 181 SGAAEPMIIPFL 192
>AC084155-1|AAG23361.2| 352|Caenorhabditis elegans Hypothetical
protein Y45G5AM.6 protein.
Length = 352
Score = 29.5 bits (63), Expect = 2.3
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 339 RSCSREDPSCSSCCRGH 389
R CS ++P+C S C GH
Sbjct: 117 RECSEKNPNCGSSCEGH 133
>AL132841-2|CAB60332.1| 469|Caenorhabditis elegans Hypothetical
protein Y15E3A.4 protein.
Length = 469
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 310 GFTILNTGDHVAVPERIHLAPLVVEDTSQPAVQ 408
GF + +TG VAVP +HLA ++ + +Q
Sbjct: 283 GFAVNHTGYFVAVPRALHLAFKIISGVASDRIQ 315
>Z48544-9|CAA88436.2| 250|Caenorhabditis elegans Hypothetical
protein ZK945.2 protein.
Length = 250
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -1
Query: 642 TVIGVKFDKGCVIAGDTLGSYGSLARFRDCPRVMKVNDLILLGCGGDYADFQYLKD 475
T+I ++ G V+ D L S L PR+ VND + + G+Y D LK+
Sbjct: 36 TMIAIRGKNGVVVVADKLIS-SKLYTDNANPRMFNVNDNVGVAVAGNYPDGFALKN 90
>U21320-7|AAA62533.1| 558|Caenorhabditis elegans Hypothetical
protein K04G7.1 protein.
Length = 558
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/40 (27%), Positives = 23/40 (57%)
Frame = +3
Query: 210 LRPSAEESPCKLLARSRSQHLHMLFPIYQQLRERVHHPEY 329
+ PS + CKL + +H+H+ Q+++E++ H +Y
Sbjct: 467 MAPSTNDEVCKLQIEALQRHIHL-----QKMQEKLLHEQY 501
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,125,022
Number of Sequences: 27780
Number of extensions: 285104
Number of successful extensions: 918
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1508017654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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