Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_N08
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.06c |caf1|pop2|CCR4-Not complex subunit Caf1|Schizosaccha...   133   3e-32
SPBC776.06c |||spindle pole body interacting protein |Schizosacc...    27   3.3  
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    27   3.3  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    26   4.4  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    25   7.7  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    25   7.7  

>SPCC18.06c |caf1|pop2|CCR4-Not complex subunit
           Caf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score =  133 bits (321), Expect = 3e-32
 Identities = 65/134 (48%), Positives = 88/134 (65%), Gaps = 1/134 (0%)
 Frame = -2

Query: 684 ELLMSSGLVLXDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESLRLYFPTVYDVKY 505
           ELL+ SGLVL + + W++FHSGYDF YLLK +T   LP +  +F++ L +YFP  YD+KY
Sbjct: 148 ELLIGSGLVLQEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIYFPKNYDIKY 207

Query: 504 LMKLCKNLKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXFDDNIESSS-GH 328
           +MK   N   GLQ++AD L++ R+GPQHQAGSD+ LT           FD +I+S     
Sbjct: 208 IMKSVLNNSKGLQDIADDLQIHRIGPQHQAGSDALLTARIFFEIRSRYFDGSIDSRMLNQ 267

Query: 327 LYGLGAPFSVNVNN 286
           LYGLG+  SV  +N
Sbjct: 268 LYGLGSTGSVLWHN 281


>SPBC776.06c |||spindle pole body interacting protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = -2

Query: 615 DFGYLLKLLTDQNLPQ-DENDFFESLRLYFPTVYDVKYLMKLCKNLKGGLQEVA 457
           D  + L  L + +L   D  + F +L  +  T  DV YL+  C    GGL  +A
Sbjct: 513 DIQFHLDRLRNSSLSTTDAAEIFLALESHIRTEEDVNYLLSNCPLHSGGLSVIA 566


>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +3

Query: 75  CPTRTLKCLLSIHIYLASXLTSLYFTIYCNCIRICPFIL*G 197
           CP  T    LS+ IYL   +   +FT++ N   I  F++ G
Sbjct: 93  CPA-TNDVFLSVLIYLDRIVHHFHFTVFINSFNIHRFLIAG 132


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +2

Query: 311 APRPYKCPL 337
           APRPYKCPL
Sbjct: 22  APRPYKCPL 30


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 212 NYAYFTLKNKWTNSDTIT 159
           NY Y T+   WT S T+T
Sbjct: 708 NYGYTTITTGWTGSTTLT 725


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
 Frame = +3

Query: 72  SCPTRTLK------CLLSIHIYLASXLTSLYFTIY 158
           SCP R +        ++    YLA  L S+YFT Y
Sbjct: 361 SCPRRVMNRTFITAVIIDFFYYLAGYLQSMYFTTY 395


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,792,356
Number of Sequences: 5004
Number of extensions: 56427
Number of successful extensions: 172
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)