Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_N08
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U21854-1|AAA87454.1|  310|Caenorhabditis elegans cCAF1 protein p...   118   4e-27
AL132860-28|CAB60501.1|  310|Caenorhabditis elegans Hypothetical...   118   4e-27
Z81592-3|CAB04729.2|  389|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z67737-5|CAA91541.2|  401|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U00032-9|AAA50631.1|  229|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>U21854-1|AAA87454.1|  310|Caenorhabditis elegans cCAF1 protein
           protein.
          Length = 310

 Score =  118 bits (284), Expect = 4e-27
 Identities = 64/137 (46%), Positives = 88/137 (64%), Gaps = 8/137 (5%)
 Frame = -2

Query: 684 ELLMSSGLVLXDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESLRLYFPTVYDVKY 505
           ELL +SGL+    I WL+F SGYDFGYLLK +T  +LP++E+ FF   +  FPT +D+K 
Sbjct: 149 ELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTFFMCHKTLFPTSFDIKI 208

Query: 504 LMKL--CKN--LKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXFDDNIESS 337
           L++   C +  LKGGLQEVADQL+++R G +HQAGSD+ LT           F DN    
Sbjct: 209 LLRTPNCASAKLKGGLQEVADQLDVKRQGVRHQAGSDALLTAATFFKIKKQFFGDNWNQI 268

Query: 336 S----GHLYGLGAPFSV 298
           +    GH++GLG+  S+
Sbjct: 269 APLICGHMFGLGSSLSL 285


>AL132860-28|CAB60501.1|  310|Caenorhabditis elegans Hypothetical
           protein Y56A3A.20 protein.
          Length = 310

 Score =  118 bits (284), Expect = 4e-27
 Identities = 64/137 (46%), Positives = 88/137 (64%), Gaps = 8/137 (5%)
 Frame = -2

Query: 684 ELLMSSGLVLXDNIKWLSFHSGYDFGYLLKLLTDQNLPQDENDFFESLRLYFPTVYDVKY 505
           ELL +SGL+    I WL+F SGYDFGYLLK +T  +LP++E+ FF   +  FPT +D+K 
Sbjct: 149 ELLTTSGLITDPRITWLTFSSGYDFGYLLKSITLGDLPKEESTFFMCHKTLFPTSFDIKI 208

Query: 504 LMKL--CKN--LKGGLQEVADQLELRRVGPQHQAGSDSHLTGMAXXXXXXXXFDDNIESS 337
           L++   C +  LKGGLQEVADQL+++R G +HQAGSD+ LT           F DN    
Sbjct: 209 LLRTPNCASAKLKGGLQEVADQLDVKRQGVRHQAGSDALLTAATFFKIKKQFFGDNWNQI 268

Query: 336 S----GHLYGLGAPFSV 298
           +    GH++GLG+  S+
Sbjct: 269 APLICGHMFGLGSSLSL 285


>Z81592-3|CAB04729.2|  389|Caenorhabditis elegans Hypothetical
           protein T16G1.3 protein.
          Length = 389

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 612 FGYLLKLLTDQNLPQDENDFFESLRLYFPT 523
           + Y ++ L D+N+P       ES RLYF T
Sbjct: 301 YEYFIEALEDKNVPYTLEQLKESYRLYFVT 330


>Z67737-5|CAA91541.2|  401|Caenorhabditis elegans Hypothetical
           protein T01H10.6 protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 269 SPLSWKLLTFTENGAPRPYKCPLELSILSSKNIFLIL 379
           S +S KL TF   G+P  Y C + L  L++ N F+I+
Sbjct: 360 SYISRKLETFL--GSPIEYTCAILLEFLTTANFFVII 394


>U00032-9|AAA50631.1|  229|Caenorhabditis elegans Hypothetical
           protein F37A4.3 protein.
          Length = 229

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
 Frame = +2

Query: 428 GPTRRNS--SWSATSCNPPFKFLHSFIKYLTS*TVGKYSRRLSKKSFSSCGRF*SVSNFN 601
           G   RN   +WSA      FKF H+   +LT  + G     L KKS+  C +   V ++ 
Sbjct: 17  GKLMRNDKLAWSAEYEAKKFKFYHNTSLFLTLQSTGPEMTNLCKKSW--CDK---VDDYF 71

Query: 602 K*PKSYPEWK 631
             P  Y  W+
Sbjct: 72  VVPHHYVNWQ 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,269,948
Number of Sequences: 27780
Number of extensions: 311909
Number of successful extensions: 780
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 755
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)