Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_N07
         (674 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0712 - 27057858-27057941,27058093-27058182,27058268-270583...    29   4.5  
02_03_0285 - 17296164-17296203,17296406-17296524,17296572-172967...    28   5.9  

>03_05_0712 -
           27057858-27057941,27058093-27058182,27058268-27058384,
           27059759-27059866,27060314-27060406,27060499-27060669,
           27061505-27061757,27061860-27062138,27062939-27063273,
           27063364-27064332,27064711-27065182,27065243-27065291,
           27066564-27066804,27067606-27067695,27068172-27068294,
           27068365-27068418
          Length = 1175

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 362 IFDIELICVNIWYHQDFSHKYCQKSV 285
           + D+ + C+N+ Y +D  HK+C  S+
Sbjct: 700 LIDVTVRCLNLLYERDSRHKFCPISL 725


>02_03_0285 -
           17296164-17296203,17296406-17296524,17296572-17296742,
           17298878-17298985,17299783-17299905,17300057-17300143,
           17300765-17300884
          Length = 255

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +1

Query: 79  LCSKL-PHFPGACXKGFACHLF---SXHHXCNIYFLFFT 183
           LC  L P +P AC +  A H+F        CN YF+F T
Sbjct: 180 LCRMLCPDWPKACYREGAAHMFLKAKSFFICNNYFVFRT 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,718,709
Number of Sequences: 37544
Number of extensions: 226109
Number of successful extensions: 509
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 509
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)