Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_N07
         (674 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever sho...    33   0.19 
AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever sho...    33   0.19 
Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical pr...    29   3.0  
DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.     29   3.0  
AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transpor...    29   3.0  

>AC024813-2|ABE73329.1| 1027|Caenorhabditis elegans Est (ever shorter
            telomeres) homologprotein 1, isoform c protein.
          Length = 1027

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +2

Query: 182  PVTLTVL*SKXKLCINFVNSSQNIDKVKTKTKTKLRSFDSIYEKNPGDTKCLRI--LTQY 355
            P++ T++ S      N  + ++N + V T     L SF  IYE NP   +C R   ++Q 
Sbjct: 794  PLSSTIISSFSNFPPNLESEAENPENVTTPEAILLASFFKIYEPNPTPVRCSRSTNISQA 853

Query: 356  RIFLEIAHF*CEKA 397
               L+I  F  EK+
Sbjct: 854  VEKLKILGFSAEKS 867


>AC024813-1|AAK27880.3| 1241|Caenorhabditis elegans Est (ever shorter
            telomeres) homologprotein 1, isoform a protein.
          Length = 1241

 Score = 33.1 bits (72), Expect = 0.19
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +2

Query: 182  PVTLTVL*SKXKLCINFVNSSQNIDKVKTKTKTKLRSFDSIYEKNPGDTKCLRI--LTQY 355
            P++ T++ S      N  + ++N + V T     L SF  IYE NP   +C R   ++Q 
Sbjct: 951  PLSSTIISSFSNFPPNLESEAENPENVTTPEAILLASFFKIYEPNPTPVRCSRSTNISQA 1010

Query: 356  RIFLEIAHF*CEKA 397
               L+I  F  EK+
Sbjct: 1011 VEKLKILGFSAEKS 1024


>Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical
           protein T03F7.1 protein.
          Length = 610

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 571 LLIDIYGFRYTISWNHIFGTFTQVKKTLSI 482
           L ID Y + Y + W HIFG F  +   L I
Sbjct: 533 LRIDAYNYDYPV-WGHIFGWFLSLSSMLCI 561


>DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.
          Length = 610

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 571 LLIDIYGFRYTISWNHIFGTFTQVKKTLSI 482
           L ID Y + Y + W HIFG F  +   L I
Sbjct: 533 LRIDAYNYDYPV-WGHIFGWFLSLSSMLCI 561


>AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transporter
           protein protein.
          Length = 610

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 571 LLIDIYGFRYTISWNHIFGTFTQVKKTLSI 482
           L ID Y + Y + W HIFG F  +   L I
Sbjct: 533 LRIDAYNYDYPV-WGHIFGWFLSLSSMLCI 561


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,195,567
Number of Sequences: 27780
Number of extensions: 246086
Number of successful extensions: 612
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)