Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_N04
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    27   2.9  
SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa...    26   3.8  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    26   5.1  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    25   8.9  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    25   8.9  

>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 21/75 (28%), Positives = 34/75 (45%)
 Frame = +1

Query: 250 LFRYVHGYVLQRRADSFHVSLLRVRFLLHVQYAPVRHEELHARMALRDVLLMSVLRLMIR 429
           L R++ GY++ RR +   +S     FLL  +YA     +       + V+L  +L+    
Sbjct: 642 LLRHITGYLVSRRLEPELISPRVFGFLL--EYAAFNVVQTEGTFTSK-VILTDLLKCYSN 698

Query: 430 GSQ*IILLRVHCVLR 474
           G+       VH VLR
Sbjct: 699 GTYKASFKNVHVVLR 713


>SPAC31G5.18c |||ubiquitin family, human C1ORF55
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -3

Query: 567 KKKVLNPNQLKNHTKKNIVRKPTMKSLLKHLTKNTVNP*KNYLLRA-TNHQAKNTH 403
           K   LN + LKN    N+ R  T+++LL+H+  ++    +  L RA   HQ++  H
Sbjct: 4   KTVFLNGDFLKNSVNVNLNRLATVETLLRHVLGDSY---ETVLERAYLTHQSRIVH 56


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -3

Query: 519 NIVRKPTMKSLLKHLTKNTVNP*KNYLLRA 430
           + + KP  KSL++ L ++T+NP +  +L A
Sbjct: 271 DFISKPPTKSLIRLLAEHTLNPVEKSVLLA 300


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 448 LLRVHCVLREVLQQRLHGGLPHYVFL 525
           LLR+H  +R+ L++  +  L  YVF+
Sbjct: 94  LLRIHMGVRKNLEKNFYKNLNEYVFI 119


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = -3

Query: 315 KKRN--MKRVRTPLKNIPMNISKQKRTNTFQ*MKQNTMLNRNTTIS 184
           KKR+  +KRV + L+++  N  ++K  N    ++  T+  +NTT S
Sbjct: 423 KKRDDKLKRVSSQLEHLKHNYEEEKSMNENLLVRIQTLEKQNTTKS 468


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,416,994
Number of Sequences: 5004
Number of extensions: 22464
Number of successful extensions: 81
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)