Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_N02
         (540 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0082 - 4060018-4061604                                           29   3.1  
02_05_1273 + 35381626-35382486,35382567-35382691,35384851-353854...    29   3.1  
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228...    27   7.2  
03_05_0865 - 28365430-28367640                                         27   7.2  
04_01_0193 - 2269010-2269834,2271936-2272127                           27   9.6  
03_01_0405 - 3140486-3140937,3141251-3141412,3141521-3141618,314...    27   9.6  

>09_02_0082 - 4060018-4061604
          Length = 528

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -3

Query: 364 PTHPSRTPQLPSPTVPVTLLVTANGLVP 281
           P  P  TP +PSPTVP   +  A    P
Sbjct: 425 PAPPVPTPSMPSPTVPAPPVTAAPATAP 452


>02_05_1273 +
           35381626-35382486,35382567-35382691,35384851-35385450,
           35385550-35385841,35386199-35386364,35386664-35386707,
           35386866-35386979,35387171-35387290,35387541-35387626,
           35388340-35388502
          Length = 856

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 364 PTHPSRTPQLPSPTVPVTLL 305
           PT P   PQ PSPT P +LL
Sbjct: 121 PTAPPPRPQAPSPTAPPSLL 140


>06_01_0318 -
           2284481-2284594,2285340-2286044,2286589-2286609,
           2287186-2287257,2287762-2287842,2288059-2288133,
           2288197-2288484
          Length = 451

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 452 RGCRSHDRHEQGERDRTCKDRQQER 526
           R  RSH+R    ERDR+ +DR + +
Sbjct: 282 RRSRSHERDHDSERDRSDRDRGRHK 306


>03_05_0865 - 28365430-28367640
          Length = 736

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +2

Query: 452 RGCRSHDR-HEQGERDRTCKDRQQER 526
           RG R  DR  E+G+RDR   DR+++R
Sbjct: 124 RGDRDRDRDRERGDRDRERGDREKDR 149


>04_01_0193 - 2269010-2269834,2271936-2272127
          Length = 338

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 450 LGGVDHTTVMSKGSGTVLVKTGSRSAV 530
           L G D TT++S+G  T  V+TG +  V
Sbjct: 118 LAGRDATTILSRGRITYAVETGRKDGV 144


>03_01_0405 -
           3140486-3140937,3141251-3141412,3141521-3141618,
           3141910-3142001,3142586-3142618
          Length = 278

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 346 TPQLPSPTVPVTLLVTANGLVP 281
           +P  P+P +PV  L+T  GL+P
Sbjct: 169 SPTAPAPALPVQALLTTAGLLP 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,782,212
Number of Sequences: 37544
Number of extensions: 107746
Number of successful extensions: 357
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 357
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)