Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_M24
         (344 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces po...    27   1.1  
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch...    25   4.4  
SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein S8|Schizosaccha...    24   5.8  
SPAC521.05 |rps802|rps8-2|40S ribosomal protein S8|Schizosacchar...    24   5.8  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    24   5.8  
SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    24   7.6  

>SPAC17H9.03c |rdl1||RAD51D-like protein 1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = -2

Query: 292 RQASFVSFSICTVQSVPSQSLSFFVATNKLPFCDDQEF*FAGQQHIRC--*CYSTRRD 125
           R A ++S S+  ++ +    LS     N  PFC D  +    QQH +C   C  +R+D
Sbjct: 124 RLAVYLSTSLVYIKQL---HLSKPALGNSWPFCLDHSYILEDQQHNKCLVHCNQSRKD 178


>SPCC126.07c |||human CTD-binding SR-like protein rA9
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 571

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 273 RFQSVPCKVFHHNHC 229
           R   +PC  + HNHC
Sbjct: 50  RIAKIPCGHYFHNHC 64


>SPAC2C4.16c |rps801|rps8-1|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 131 ARWRLWRSEHFSLLGGKKGR 72
           A +R+W   H+ +L G KG+
Sbjct: 107 APFRVWYETHYGILMGSKGK 126


>SPAC521.05 |rps802|rps8-2|40S ribosomal protein
           S8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 200

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 131 ARWRLWRSEHFSLLGGKKGR 72
           A +R+W   H+ +L G KG+
Sbjct: 107 APFRVWYETHYGILMGSKGK 126


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = -3

Query: 261 VPCKVFHHNHCRFSLPQINCHFAMTKNSNSQGS 163
           V CK F  N CR+     NC    T  SN Q +
Sbjct: 2   VVCKYFLQNRCRYG---TNCKNQHTVPSNGQNA 31


>SPBC17G9.13c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 317

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 12/42 (28%), Positives = 19/42 (45%)
 Frame = +1

Query: 214 WQRKTTMIVMEHFARYRLKTRQN*LAVSQFTVIRRHNLLSQF 339
           W    + I++ HF  Y  K R++     +  + R  NLL  F
Sbjct: 65  WDPMASQILISHFQAYARKARKSNPNPHKRRIKRFRNLLKTF 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,382,500
Number of Sequences: 5004
Number of extensions: 24502
Number of successful extensions: 47
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)