Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_M24
(344 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0343 - 20437780-20438009,20438576-20438666 31 0.32
04_04_0111 - 22842337-22842648,22843008-22843402,22843732-228440... 29 0.98
08_02_0604 - 19215017-19215101,19215870-19216021,19216591-192166... 29 1.3
01_06_0231 + 27727110-27727206,27727315-27727447,27727491-277275... 29 1.3
07_01_0266 + 1977961-1978120,1979547-1979680,1979813-1979911,198... 28 1.7
12_02_1179 - 26720533-26721021,26721329-26722597 27 3.0
04_04_0475 + 25500470-25500609,25500697-25500794,25502806-255029... 27 3.0
02_05_0979 + 33268294-33269595 27 3.0
03_05_0348 - 23346182-23348022,23348118-23348148 27 3.9
01_05_0652 - 23934604-23934636,23934783-23934893,23935000-239351... 27 3.9
07_03_0248 + 15798650-15799075,15799143-15799619,15799713-15800948 27 5.2
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 27 5.2
11_06_0425 - 23365108-23366028,23366182-23366340,23366445-233666... 26 6.9
11_04_0169 + 14397380-14397652,14398317-14398874,14399593-143998... 26 6.9
06_01_0471 - 3341839-3341881,3341987-3342080,3344724-3344914,334... 26 6.9
01_06_0913 + 32938376-32938582 26 6.9
08_02_0484 + 17665714-17666877 26 9.1
02_04_0282 - 21569089-21569165,21569836-21569946,21570036-215701... 26 9.1
01_05_0476 - 22575586-22575817,22575985-22576098,22576165-225762... 26 9.1
>05_04_0343 - 20437780-20438009,20438576-20438666
Length = 106
Score = 30.7 bits (66), Expect = 0.32
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -3
Query: 186 KNSNSQGSNTSAANAIALGAMAVVAVGTFLFTWWKERKVPPPH 58
K + S+G + LG AVV + FLF +W+++K H
Sbjct: 43 KKAQSKGHTGRTVLIVLLGIGAVVLLSFFLFKYWQKKKREEQH 85
>04_04_0111 -
22842337-22842648,22843008-22843402,22843732-22844073,
22844154-22844282,22844402-22844514,22844596-22844667,
22844783-22844859,22844978-22845052,22845058-22845121,
22845332-22845403,22845496-22845628,22846859-22846961
Length = 628
Score = 29.1 bits (62), Expect = 0.98
Identities = 18/41 (43%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 174 SQG-SNTSA-ANAIALGAMAVVAVGTFLFTWWKERKVPPPH 58
SQG S T A A +A A + AV F WW+ RK P H
Sbjct: 235 SQGDSKTGAIAGGVAAAAALLFAVPAIGFAWWRRRK-PEEH 274
>08_02_0604 -
19215017-19215101,19215870-19216021,19216591-19216614,
19216656-19216884,19217061-19217177,19219249-19219311,
19219887-19220125
Length = 302
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Frame = -3
Query: 147 NAIALGAM---AVVAVGTFLFTWWKERKVP 67
N I +G++ A+V VG +LF W K R++P
Sbjct: 269 NDITIGSLLGTALVIVGLYLFLWAKAREIP 298
>01_06_0231 +
27727110-27727206,27727315-27727447,27727491-27727553,
27729069-27729140,27729640-27729783,27729868-27729990,
27730102-27730157,27730249-27730635,27731176-27731366,
27731498-27731630,27731715-27731869,27732188-27732379,
27732490-27732750
Length = 668
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = -3
Query: 156 SAANAIALGAMAVVAVGTFLFTWWKERKVPPP 61
++ANA +V + GT F+ +KE KVPPP
Sbjct: 259 ASANAPVPAVASVPSTGTGSFSAFKEIKVPPP 290
>07_01_0266 +
1977961-1978120,1979547-1979680,1979813-1979911,
1980257-1980414,1981930-1982018,1982678-1982769,
1983658-1983706,1983953-1983966
Length = 264
Score = 28.3 bits (60), Expect = 1.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +3
Query: 225 NDNDCDGTLCTVQIENETKLACRFT 299
+DN C G L T N +K+ C FT
Sbjct: 239 DDNTCQGELVTEYTNNGSKITCGFT 263
>12_02_1179 - 26720533-26721021,26721329-26722597
Length = 585
Score = 27.5 bits (58), Expect = 3.0
Identities = 13/50 (26%), Positives = 21/50 (42%)
Frame = -3
Query: 216 PQINCHFAMTKNSNSQGSNTSAANAIALGAMAVVAVGTFLFTWWKERKVP 67
P C K + + N + ++ + VVA+ F WWK+ K P
Sbjct: 531 PCQECQAVNEKKTGGKKRNANRSHYPVFLFVFVVAIIALFFPWWKDYKEP 580
>04_04_0475 +
25500470-25500609,25500697-25500794,25502806-25502915,
25502998-25503293,25503399-25503474,25503577-25503688,
25503955-25504004,25504090-25504392,25504446-25504547,
25505463-25505635,25505745-25505917,25505997-25506106,
25506180-25506329,25506726-25506881,25507000-25507116,
25507277-25507474,25507809-25507952
Length = 835
Score = 27.5 bits (58), Expect = 3.0
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = -3
Query: 198 FAMTKNSNSQGSNTSAANAIALGAMAVVAVGTFLFTWW 85
+ + +N + + A ++ +A+ A G FLF WW
Sbjct: 55 YLLKRNLQATAKSFMAEGKVSADPVAIDAPGGFLFEWW 92
>02_05_0979 + 33268294-33269595
Length = 433
Score = 27.5 bits (58), Expect = 3.0
Identities = 18/60 (30%), Positives = 25/60 (41%)
Frame = +1
Query: 61 RWGXLPFFPPSKEKCSDRHNRHRA*CYSISSGCVAALRIRILGHRKMAIYLWQRKTTMIV 240
+W L PP +E + RH H S C + ++I GH YLW T I+
Sbjct: 94 QWQHLIPRPPVEEIMTARHLPHGTIFPLASKSCHGLVLLKITGHH--THYLWNPSTRHIL 151
>03_05_0348 - 23346182-23348022,23348118-23348148
Length = 623
Score = 27.1 bits (57), Expect = 3.9
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 225 FSLPQINCHFAMTKNSNSQGSNTSAANAIALGAMAVVA 112
FSL Q + A+ + ++ T+ +AIALG VVA
Sbjct: 161 FSLAQPRAYVALNDPAAAEADITALVDAIALGLFCVVA 198
>01_05_0652 -
23934604-23934636,23934783-23934893,23935000-23935188,
23935893-23936012,23936109-23936273,23936638-23936790,
23936867-23936976,23937280-23937397,23938197-23938427,
23938984-23939175,23939661-23939945,23940637-23940686,
23940846-23940921,23941048-23941135,23941689-23941771,
23941883-23942248,23942462-23942476,23942909-23943018,
23943134-23943231,23943961-23944019
Length = 883
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -3
Query: 198 FAMTKNSNSQGSNTSAANAIALGAMAVVAVGTFLFTWW 85
+ M +N + A ++ +A+ A G FLF WW
Sbjct: 28 YFMKRNLQATAKAFQAEGKVSSDPVAIDAPGGFLFEWW 65
>07_03_0248 + 15798650-15799075,15799143-15799619,15799713-15800948
Length = 712
Score = 26.6 bits (56), Expect = 5.2
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 52 SSVRWGXLPFFPPSKEKCSDRHNRHRA*CYSI 147
S +RW F PPS + SD H + RA +++
Sbjct: 498 SRLRWACDRFLPPSTQLQSDTHWKTRAHTHTV 529
>03_06_0454 + 34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 26.6 bits (56), Expect = 5.2
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = -3
Query: 258 PCKVFHHNHCRFSLPQINCHFAMTKNSN---SQGSNTSAANAI 139
PCK + + LPQ++C + + S+ S S+ANA+
Sbjct: 1569 PCKQLESENGSYCLPQVDCQIEPCYSESVVLSEASTMSSANAM 1611
>11_06_0425 -
23365108-23366028,23366182-23366340,23366445-23366640,
23366995-23367527,23367817-23368272,23368507-23368758,
23368890-23369007,23369836-23369993
Length = 930
Score = 26.2 bits (55), Expect = 6.9
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +3
Query: 180 NSWSSQNGNLFVATKNDNDCDGTLCTVQIENET 278
N WS N NL + DG++ ++ +N+T
Sbjct: 539 NKWSLSNSNLCITNDMKPSKDGSILELKCDNKT 571
>11_04_0169 +
14397380-14397652,14398317-14398874,14399593-14399823,
14399924-14400064,14401051-14401248,14401319-14401591,
14401959-14401976
Length = 563
Score = 26.2 bits (55), Expect = 6.9
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 270 FQSVPCKVFHHNHCRFSLPQINCHFAMTKNSNSQGS 163
F+ PC HH+H SLP + +S+S+ S
Sbjct: 8 FKWAPCPHAHHHHSTSSLPSSSSSSTSAPSSSSRCS 43
>06_01_0471 -
3341839-3341881,3341987-3342080,3344724-3344914,
3345025-3345248
Length = 183
Score = 26.2 bits (55), Expect = 6.9
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -2
Query: 145 CYSTRRDGGCGG 110
C RRDGGCGG
Sbjct: 87 CLHRRRDGGCGG 98
>01_06_0913 + 32938376-32938582
Length = 68
Score = 26.2 bits (55), Expect = 6.9
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = -3
Query: 159 TSAANAIALGAMAVVAVGTFLF 94
T+AA A+ALG +A AVG +LF
Sbjct: 47 TNAAPAVALGTLAAAAVG-YLF 67
>08_02_0484 + 17665714-17666877
Length = 387
Score = 25.8 bits (54), Expect = 9.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -3
Query: 141 IALGAMAVVAVGTFLFTWWKERKV 70
+A+ A AVVA+ LF W+ ++V
Sbjct: 14 VAVAAAAVVALAVALFLLWRNKRV 37
>02_04_0282 -
21569089-21569165,21569836-21569946,21570036-21570145,
21570222-21570347,21570433-21570520,21570602-21570722,
21570814-21570886,21571533-21571596,21572250-21572452,
21572557-21572615,21572710-21572809,21574001-21574110
Length = 413
Score = 25.8 bits (54), Expect = 9.1
Identities = 15/47 (31%), Positives = 20/47 (42%)
Frame = +3
Query: 150 QRMCCCPAN*NSWSSQNGNLFVATKNDNDCDGTLCTVQIENETKLAC 290
+ MCC W Q GN+ VA+ D C G +V+ E C
Sbjct: 343 RNMCCGTPPDCEWKGQAGNVCVAS-FDWSCSGICKSVERIKEVHARC 388
>01_05_0476 -
22575586-22575817,22575985-22576098,22576165-22576249,
22576337-22576855,22577846-22577924
Length = 342
Score = 25.8 bits (54), Expect = 9.1
Identities = 15/65 (23%), Positives = 30/65 (46%)
Frame = -3
Query: 198 FAMTKNSNSQGSNTSAANAIALGAMAVVAVGTFLFTWWKERKVPPPHGATRRESAKRXAE 19
++ T+N G+ A+ I+L +A + G+F W+ +PP + +E + A
Sbjct: 269 YSTTRNLVECGTRKIASEDISLKGVAAPSEGSFELVKWRS-PIPPYYSYLVKECVVQKAS 327
Query: 18 QSAAE 4
+ E
Sbjct: 328 EVVPE 332
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,963,311
Number of Sequences: 37544
Number of extensions: 190468
Number of successful extensions: 546
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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