Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P12_pT_M19
(586 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc... 67 2e-12
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 64 1e-11
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 58 9e-10
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac... 56 4e-09
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 54 2e-08
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c... 53 4e-08
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 39 6e-04
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha... 28 1.2
SPAP8A3.14c |||mitochondrial inner membrane protein |Schizosacch... 27 2.0
SPBC216.01c ||SPBC713.13c|DNA damage response protein |Schizosac... 26 3.5
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 25 6.2
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 25 8.1
>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 103
Score = 66.9 bits (156), Expect = 2e-12
Identities = 30/90 (33%), Positives = 51/90 (56%)
Frame = -2
Query: 402 IVKIQSTDDFKEKVINSKVPVVVDFFATWCNPCRLLTPRLESIIAESKGKVVLAKVDIDE 223
+ ++ + +FK V K+ VVVDFFATWC PC+ + P+ E + + KVD+D+
Sbjct: 2 VKQVSDSSEFKSIVCQDKL-VVVDFFATWCGPCKAIAPKFEQ-FSNTYSDATFIKVDVDQ 59
Query: 222 QTDLALDYEVSSVPXLVAIKNGKVQNRLVG 133
+++A + V ++P KNG+ +VG
Sbjct: 60 LSEIAAEAGVHAMPSFFLYKNGEKIEEIVG 89
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 64.1 bits (149), Expect = 1e-11
Identities = 32/107 (29%), Positives = 59/107 (55%)
Frame = -2
Query: 453 KNYGFLRNFSLTASKNDIVKIQSTDDFKEKVINSKVPVVVDFFATWCNPCRLLTPRLESI 274
+++ R+F+ + + ++S D+ ++ KV VVDF+A WC PC+ L P LE
Sbjct: 2 RSFALRRSFTSSRILRKVNAVESFGDYNTRISADKV-TVVDFYADWCGPCKYLKPFLEK- 59
Query: 273 IAESKGKVVLAKVDIDEQTDLALDYEVSSVPXLVAIKNGKVQNRLVG 133
++E K V+ D+ +D+A V ++P +V + G+ +R+VG
Sbjct: 60 LSEQNQKASFIAVNADKFSDIAQKNGVYALPTMVLFRKGQELDRIVG 106
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 58.0 bits (134), Expect = 9e-10
Identities = 24/79 (30%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Frame = -2
Query: 402 IVKIQSTDDFKEKVINSKVPVVVDFFATWCNPCRLLTPRLESI--IAESKGKVVLAKVDI 229
+V++QS ++ + + SK +++F+ATWC C+ L P E + + E V++ K+D
Sbjct: 22 VVELQSLNELENTIRASKKGALIEFYATWCGHCKSLAPVYEELGALFEDHNDVLIGKIDA 81
Query: 228 DEQTDLALDYEVSSVPXLV 172
D +D+A Y ++ P L+
Sbjct: 82 DTHSDVADKYHITGFPTLI 100
Score = 48.4 bits (110), Expect = 8e-07
Identities = 23/80 (28%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
Frame = -2
Query: 408 NDIVKIQSTDDFKEKVINSKVPVVVDFFATWCNPCRLLTPRLESI--IAESKGKVVLAKV 235
+++V++ S + F + V++ K V+V+F+A WC C+ L P E++ + +++ V + K+
Sbjct: 140 SNVVELDSLN-FDKVVMDDKKDVLVEFYADWCGYCKRLAPTYETLGKVFKNEPNVEIVKI 198
Query: 234 DIDEQTDLALDYEVSSVPXL 175
+ D D+ +EV+S P +
Sbjct: 199 NADVFADIGRLHEVASFPTI 218
>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
Txl1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 290
Score = 56.0 bits (129), Expect = 4e-09
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Frame = -2
Query: 342 VVVDFFATWCNPCRLLTPRLESIIAE-SKGKVVLAKVDIDEQTDLALDYEVSSVPXLVAI 166
+ VD +A WC PC+ ++P + ++ + K V AKV++DEQ +A V ++P V
Sbjct: 22 LAVDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFF 81
Query: 165 KNGKVQNRLVGLQXTEKRRK 106
+NGK + L G + K
Sbjct: 82 ENGKQIDMLTGANPQALKEK 101
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 54.0 bits (124), Expect = 2e-08
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = -2
Query: 366 KVINSKVPVVVDFFATWCNPCRLLTPRLESIIAE-SKGKVVLAKVDIDEQTDLALDYEVS 190
++I + ++V F+A WC C+ L P ES E K + L +VD E+ DL +Y +
Sbjct: 34 ELITADKVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIR 93
Query: 189 SVPXLVAIKNGK 154
P L KNGK
Sbjct: 94 GYPTLNVFKNGK 105
Score = 48.4 bits (110), Expect = 8e-07
Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 3/99 (3%)
Frame = -2
Query: 438 LRNFSLTASKNDIVKIQSTDDFKEKVINSKVPVVVDFFATWCNPCRLLTPRLESIIAE-- 265
+++ + S+ D+V + + D+F + V++ V+V+F+A WC C+ L P E + E
Sbjct: 345 IKSQPIPESQEDLVVLVA-DNFDDIVMDETKDVLVEFYAPWCGHCKNLAPTYEKLAEEYS 403
Query: 264 SKGKVVLAKVDIDEQTDLALDYEVSSVPXLVAIK-NGKV 151
VV+AK+D E D+++ +S P ++ K N KV
Sbjct: 404 DDSNVVVAKIDATE-NDISV--SISGFPTIMFFKANDKV 439
>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 52.8 bits (121), Expect = 4e-08
Identities = 28/104 (26%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Frame = -2
Query: 399 VKIQSTDDFKEKVINSKVPVVV-DFFATWCNPCRLLTPRLESIIAESKGKVVLAKVDIDE 223
V+I + F+E + N K +++ +F+A W PC+ + + ++K V L K++ ++
Sbjct: 3 VEITFVEQFQEILQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKDTKNAVFL-KIEAEK 61
Query: 222 QTDLALDYEVSSVPXLVAIKNGKVQNRLVGLQXTEKRRKWIEQF 91
+D+A ++V++VP V I KV R+ G +K + I+++
Sbjct: 62 FSDIAESFDVNAVPLFVLIHGAKVLARISGAN-PQKLKAAIDEY 104
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 38.7 bits (86), Expect = 6e-04
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -2
Query: 366 KVINSKVPVVVDFFATWCNPCRLLTPRLESIIAESKGKVVLAKVDIDEQTDLAL--DYEV 193
K + +K P +V F+A WC C+ L P + + + + + VD D + A+ Y+V
Sbjct: 43 KFVKAKGPSLVVFYAPWCGYCKKLVPTYQKLASNLHSLLPVTAVDCDADQNRAVCSQYQV 102
Query: 192 SSVPXL 175
P +
Sbjct: 103 QGFPTI 108
>SPAC458.03 |||nuclear telomere cap complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 868
Score = 27.9 bits (59), Expect = 1.2
Identities = 19/94 (20%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
Frame = -2
Query: 552 LLPNNLQYCI-VHCFYKMLTKNITNLFIRNSTLKKNYGFLRNFSLTASKNDIVKIQSTDD 376
L+P ++C+ + + LT + LF+ L+ N + NFS + +++D +
Sbjct: 215 LIPLTQKFCVQLQKLFADLTVSDQMLFLNQLLLEHNTKYPTNFSYSTARDDRITGSLATL 274
Query: 375 FKEKVINSKVPVVVDFFATWCNPCRLLTPRLESI 274
+ ++ +++F+ W P L+ R+E +
Sbjct: 275 LRLNFSSTHFLRLIEFY--WGVPTNLIIKRVEVV 306
>SPAP8A3.14c |||mitochondrial inner membrane protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 677
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 471 RNSTLKKNYGFLRNFSLTASKNDIVKIQSTDDFKEKVI 358
++S L + GFL NFSL S + K+ S + E+ +
Sbjct: 580 QDSQLNASSGFLTNFSLKDSTDRFYKVLSYEKVSERFV 617
>SPBC216.01c ||SPBC713.13c|DNA damage response protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 836
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 572 RPMDPIFYYQIICNIA*CIVFTKC 501
R D IF+ Q +CNIA + F C
Sbjct: 365 RKQDGIFFIQQVCNIAKGLQFQSC 388
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = -2
Query: 435 RNFSLTASKNDIVKIQSTDDFKEKVINSKVPV 340
RN + + D+ Q ++F+EK++N +PV
Sbjct: 72 RNPTGDVTATDVYSSQYLNNFQEKLLNGSIPV 103
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.0 bits (52), Expect = 8.1
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +2
Query: 410 FDAVREKFLKNP*FFFNVLFRMNKLVIFLVSI 505
FD + FLKN F + L+R++ L +FL S+
Sbjct: 706 FDYDPDLFLKNIPVFVDGLYRVDYLDLFLTSL 737
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,524
Number of Sequences: 5004
Number of extensions: 41084
Number of successful extensions: 127
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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