Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_M17
         (385 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    27   0.76 
SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyc...    25   5.4  
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    25   5.4  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    24   7.1  

>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 27.5 bits (58), Expect = 0.76
 Identities = 11/50 (22%), Positives = 22/50 (44%)
 Frame = +1

Query: 58  PVLILQAHTLXRIHLKHQICLRSLHSPSTEI*CISFCSSHRRTL*RIQTY 207
           P  ++  +   R H+       +LH+P+  + C   C+ +   L  I+ Y
Sbjct: 752 PFNMMMCNNTSRYHVARMALQHALHNPTVAVNCNMLCAKYAWKLEEIENY 801


>SPAC11G7.02 |pub1||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 767

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 247 CYMKIDPGKKTEKNKSEYVTKYAYDLNKRKCIKF 146
           C++K+      E + +E + + A DL KR  IKF
Sbjct: 413 CHIKVRRNHIFEDSYAEIMRQSATDLKKRLMIKF 446


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 24.6 bits (51), Expect = 5.4
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 214 EKNKSEYVTKYAYD-LNKRKCIKF 146
           EKN  EY+ K  +D LN++K   F
Sbjct: 264 EKNPKEYILKLLFDHLNRKKTNNF 287


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = -1

Query: 220 KTEKN--KSEYVTKYAYDLNKRKCIK 149
           + EKN  K++ + K+ Y LN+++C K
Sbjct: 882 REEKNLGKAQMMLKWLYQLNRKECNK 907


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,510,098
Number of Sequences: 5004
Number of extensions: 28614
Number of successful extensions: 71
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)