Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P12_pT_M17
         (385 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0043 + 14016958-14017106,14017198-14017291,14018488-140185...    27   3.8  
02_01_0717 + 5351504-5351602,5353401-5353499,5353574-5353675,535...    27   3.8  
04_04_0882 + 29061504-29061512,29061852-29061964,29062371-290623...    27   5.1  
02_01_0188 - 1262908-1262970,1264185-1264790,1265290-1266030           27   6.7  
03_02_0490 - 8840577-8840914,8841009-8841067,8841168-8841283,884...    26   8.9  
01_03_0161 + 13337265-13337297,13337880-13338017,13338211-133383...    26   8.9  

>03_03_0043 +
           14016958-14017106,14017198-14017291,14018488-14018582,
           14018658-14018825,14019091-14019163,14019236-14019288,
           14019720-14019811,14020141-14020193,14020272-14020397,
           14020710-14020955
          Length = 382

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 232 DPGKKTEKNKSEYVTKYAYD 173
           DPG  T +N S+Y++ Y YD
Sbjct: 134 DPGTVTAENVSQYLSAYPYD 153


>02_01_0717 +
           5351504-5351602,5353401-5353499,5353574-5353675,
           5353756-5353815,5353900-5354006,5354114-5354196,
           5354372-5354462,5354561-5354768
          Length = 282

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -1

Query: 223 KKTEKNKSEYVTKYAYDLNKRKCIKFPYSGYGGNVNR 113
           K TE +  E+  KY    +++K +K  Y+ + GN+NR
Sbjct: 120 KVTEADIEEFEAKYRGSDSEKKDLKDLYTKFKGNMNR 156


>04_04_0882 +
           29061504-29061512,29061852-29061964,29062371-29062398,
           29062690-29062734,29063379-29063456,29063573-29063597,
           29063690-29063722,29063793-29063914,29064015-29064145,
           29064242-29064468,29065175-29065431,29065859-29065945
          Length = 384

 Score = 27.1 bits (57), Expect = 5.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -1

Query: 175 DLNKRKCIKFPYSGYGGNVNRFDALNECXKACEPAK*ALENDDK 44
           ++  + C K  Y+GYG + + F+    C  A    K  LE  DK
Sbjct: 56  EVEAKTCSKMFYAGYGYHGSNFEQTYRCYPASFFDKPHLEGGDK 99


>02_01_0188 - 1262908-1262970,1264185-1264790,1265290-1266030
          Length = 469

 Score = 26.6 bits (56), Expect = 6.7
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = -1

Query: 241 MKIDPGKKTEKNKSEYVTKYAYDLNKRKCIKFPYSGYGGNVNRFDALN 98
           +++  G    + K +  T+Y + + K  C      G GG V   DALN
Sbjct: 88  LRVVAGAAASRTKMKVATRYGHSVPKLACPGDGGGGGGGLVISTDALN 135


>03_02_0490 -
           8840577-8840914,8841009-8841067,8841168-8841283,
           8841578-8841640,8841826-8842038,8842211-8842330,
           8842453-8842578,8842593-8842749,8842830-8842962,
           8843054-8843138,8843305-8843421
          Length = 508

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 106 HQICLRSLHSPSTEI*CISFCSSHRRTL 189
           H++C + LH P  ++ C+ F  ++R  L
Sbjct: 188 HKLCYKELHHPKCDV-CLQFIPTNRTGL 214


>01_03_0161 +
           13337265-13337297,13337880-13338017,13338211-13338308,
           13338395-13338450,13338664-13338781,13338889-13338916,
           13339021-13339112,13339321-13339477,13339569-13339693,
           13339785-13339884,13339991-13340059
          Length = 337

 Score = 26.2 bits (55), Expect = 8.9
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 226 GKKTEKNKSEYVTKYAYDLNKRKCIKFPYSGY 131
           G   +K KS ++ K   D +K  C K+  SGY
Sbjct: 44  GASFKKAKSVFIAKVDCDEHKSVCSKYGVSGY 75


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,046,784
Number of Sequences: 37544
Number of extensions: 160451
Number of successful extensions: 287
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 286
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 287
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)